YRC Public Data Repository - Protein Structure Prediction

Protein:	RDL1
Organism:	Saccharomyces cerevisiae
Length:	139 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDL1.

Description	E-value	Query Range	Subject Range
RDL1_YEAST - Thiosulfate sulfurtransferase RDL1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... RDL1 - Protein of unknown function containing a rhodanese-like domain; localized to the mitochondrial outer... gi\|190407585 - gi\|190407585\|gb\|EDV10852.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151945367 - gi\|151945367\|gb\|EDN63610.1\| conserved protein [Saccharomyces cerevisiae YJM789]	4.0E-29	[1..139]	[1..139]
gi\|7434958 - pir\|\|D72494 probable thiosulfate sulfurtransferase APE2595 - Aeropyrum pernix (strain K1) gi\|5106301, gi\|1... - gi\|5106301\|dbj\|BAA81612.1\| 218aa long hypothetical thiosulfate sulfurtransferase [Aeropyrum pernix K...	4.0E-26	[2..137]	[48..212]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-24	[2..138]	[52..182]
gi\|7594903 - gi\|7594903\|dbj\|BAA88985.2\| Ntdin [Nicotiana tabacum]	9.0E-24	[6..136]	[56..183]
Y765_SYNY3 - UPF0176 protein sll0765 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0765 PE=3 SV=1 gi\|7429405 - pir\|\|S76272 yceA protein homolog - Synechocystis sp. (strain PCC 6803) Y765_SYNY3 - UPF0176 protein sll0765 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0765 PE=3 SV...	2.0E-23	[13..139]	[100..217]
Y2673_STAA1 - UPF0176 protein SAHV_2673 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=SAHV_2673 PE=3 SV=1 gi\|25303557 - pir\|\|A99978 conserved hypotehtical protein SA2481 [imported] - Staphylococcus aureus (strain N315) Y2770_STAA2 - UPF0176 protein SaurJH1_2770 OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_2770 PE=3 SV=1 Y2713_STAA9 - UPF0176 protein SaurJH9_2713 OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_2713 PE=3 SV=1 gi\|255007461 - gi\|255007461\|ref\|ZP_05146062.2\| hypothetical protein SauraM_13350 [Staphylococcus aureus subsp. aure... Y2689_STAAM - UPF0176 protein SAV2689 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2689 PE=3 SV=1 gi\|253316692 - gi\|253316692\|ref\|ZP_04839905.1\| hypothetical protein SauraC_11195 [Staphylococcus aureus subsp. aure... Y2481_STAAN - UPF0176 protein SA2481 OS=Staphylococcus aureus (strain N315) GN=SA2481 PE=3 SV=1 gi\|269204329\|ref... - hypothetical protein SAAV_2763 [Staphylococcus aureus subsp. aureus ED98]	3.0E-23	[3..132]	[91..211]
gi\|17230398, gi\|... - gi\|17230398\|ref\|NP_486946.1\| hypothetical protein all2906 [Nostoc sp. PCC 7120], gi\|17132000\|dbj\|BAB... gi\|25313623 - pir\|\|AC2169 molybdopterin biosynthesis protein [imported] - Nostoc sp. (strain PCC 7120)	3.0E-23	[11..138]	[270..388]
gi\|25303563 - gi\|25303563\|pir\|\|E98178 hypothetical protein AGR_L_756 [imported] - Agrobacterium tumefaciens (strai... gi\|15158730, gi\|... - gi\|15890494\|ref\|NP_356166.1\| hypothetical protein AGR_L_756 [Agrobacterium tumefaciens str. C58], gi...	3.0E-23	[10..139]	[122..242]
STR15_ARATH - Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=...	4.0E-23	[2..138]	[51..182]
THTR_MYCTU - Putative thiosulfate sulfurtransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=... THTR1_MYCBO - Putative thiosulfate sulfurtransferase 1 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN... gi\|121636739, gi... - gi\|121636739\|ref\|YP_976962.1\| putative thiosulfate sulfurtransferase cysA2 [Mycobacterium bovis BCG ... THT1_MYCBO, THTR... - Putative thiosulfate sulfurtransferase 1 OS=Mycobacterium bovis GN=cysA1 PE=3 SV=1, (P59989) Putativ... THTR_MYCTU - Putative thiosulfate sulfurtransferase OS=Mycobacterium tuberculosis GN=cysA1 PE=1 SV=1 gi\|134151258, gi... - gi\|254365745\|ref\|ZP_04981790.1\| thiosulfate sulfurtransferase cysA3 (rhodanese-like protein) [Mycoba... THTR_MYCTO - Putative thiosulfate sulfurtransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=... gi\|148504745, gi... - gi\|167970219\|ref\|ZP_02552496.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis H37R... gi\|123214368, gi... - gi\|76785464\|ref\|ZP_00772634.1\| COG2897: Rhodanese-related sulfurtransferase [Mycobacterium tuberculo... gi\|215444952, gi... - gi\|215447399\|ref\|ZP_03434151.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis T85]... gi\|218754890, gi... - gi\|218754890\|ref\|ZP_03533686.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis GM 1... gi\|219556674, gi... - gi\|219559160\|ref\|ZP_03538236.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis T17]... gi\|224772323, gi... - gi\|224989210\|ref\|YP_002643897.1\| putative thiosulfate sulfurtransferase [Mycobacterium bovis BCG str... gi\|194541800, gi... - gi\|81255268\|ref\|ZP_00879751.1\| COG2897: Rhodanese-related sulfurtransferase [Mycobacterium tuberculo... gi\|215405112, gi... - gi\|215405112\|ref\|ZP_03417293.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis 02_1... gi\|255097975, gi... - gi\|255097975\|ref\|ZP_05327453.1\| putative thiosulfate sulfurtransferase [Mycobacterium tuberculosis K... gi\|215412981, gi... - gi\|215412981\|ref\|ZP_03421682.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis 94_M... gi\|254814614, gi... - gi\|254816991\|ref\|ZP_05221992.1\| putative thiosulfate sulfurtransferase [Mycobacterium tuberculosis K... gi\|215426076, gi... - gi\|215428569\|ref\|ZP_03426488.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis T92]... gi\|254549787, gi... - gi\|254552200\|ref\|ZP_05142647.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis '98-... gi\|215429666, gi... - gi\|215432073\|ref\|ZP_03429992.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis EAS0... gi\|253321652, gi... - gi\|253800149\|ref\|YP_003033150.1\| thiosulfate sulfurtransferase cysA3 [Mycobacterium tuberculosis KZN...	5.0E-23	[2..139]	[116..275]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKAVMNAWN GTESQSKNVS NIQSYSFEDM KRIVGKHDPN VVLVDVREPS EYSIVHIPAS  60
   61 INVPYRSHPD AFALDPLEFE KQIGIPKPDS AKELIFYCAS GKRGGEAQKV ASSHGYSNTS 120
  121 LYPGSMNDWV SHGGDKLDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.512579
Match:	1h4kX_
Description:	Sulfurtransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.746344090872559	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: