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View Structure Prediction Details

Protein: RFM1
Organism: Saccharomyces cerevisiae
Length: 310 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFM1.

Description E-value Query
Range
Subject
Range
gi|49528560 - gi|49528560|emb|CAG62221.1| unnamed protein product [Candida glabrata]
gi|49528560, gi|... - gi|50293671|ref|XP_449247.1| unnamed protein product [Candida glabrata], gi|49528560|emb|CAG62221.1|...
182.0 [0..7] [306..2]
gi|44984025 - gi|44984025|gb|AAS53035.1| AER355Cp [Ashbya gossypii ATCC 10895]
gi|44984025, gi|... - gi|45190957|ref|NP_985211.1| AER355Cp [Ashbya gossypii ATCC 10895], gi|44984025|gb|AAS53035.1| AER35...
151.0 [0..15] [302..51]
gi|49641646 - gi|49641646|emb|CAH01364.1| KLLA0C07062p [Kluyveromyces lactis]
gi|50305109, gi|... - gi|50305109|ref|XP_452513.1| unnamed protein product [Kluyveromyces lactis], gi|49641646|emb|CAH0136...
142.0 [0..20] [302..78]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTEIIKN SDLQSLINDK RRLINEIKDF NKSIKPLEFE SYQDYFLIKT FKKGISASGH  60
   61 VDIDSLRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEYGIYYKKI KRNSTQEVGE PIPRNTSSSS SSTRSNSSAD ISDTEYSGEN TPTTTGAASR  60
   61 RRRTRSRAIQ RENSLPASLP SISEANANND DVTISEINGS ELPFPIPISE VENIDIASDI 120
  121 TERDGIRRRS SRISERDKRR SQSRLGSEED EEGDGHDGDE GETKIQDLYE SLVPKILESR 180
  181 RRSDWILPPK ARYTPEKQMR TKPSFKSIKI NELVGNKRIR SILSRFEGGV AGIRKRDWDS 240
  241 TQ

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.72
Match:
Description: No description for 1ej6B was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle