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View Structure Prediction Details

Protein: NFI1
Organism: Saccharomyces cerevisiae
Length: 726 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFI1.

Description E-value Query
Range
Subject
Range
gi|109015278 - gi|109015278|ref|XP_001095153.1| PREDICTED: protein inhibitor of activated STAT, 3 [Macaca mulatta]
569.0 [0..29] [515..69]
PIAS3 - protein inhibitor of activated STAT, 3
557.0 [0..35] [515..3]
PIAS3_MOUSE - E3 SUMO-protein ligase PIAS3 OS=Mus musculus GN=Pias3 PE=1 SV=3
551.0 [0..35] [515..3]
PIAS3_RAT - E3 SUMO-protein ligase PIAS3 OS=Rattus norvegicus GN=Pias3 PE=1 SV=2
550.0 [0..35] [515..3]
gi|156121017, gi... - gi|76612595|ref|XP_870143.1| PREDICTED: similar to Protein inhibitor of activated STAT protein 3 iso...
549.0 [0..35] [515..3]
gi|61372761, gi|... - gi|61372761|gb|AAX43907.1| protein inhibitor of activated STAT 3 [synthetic construct], gi|30584417|...
546.0 [0..42] [515..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVMSNNNN NNNNNNASYM FTNPLSNTGG GLINEIKDAI NEMEQLKVLE LKQICKSLDL  60
   61 SITGKKAVLQ DRIKQFLRKS CDIGHIDPWR PKAIKI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.154902
Match: PF02037
Description: SAP domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIAKVRINSS LPKYSTLWET LKTGAFKHPV ASGQLPVTAL QSTALPPYSQ QQALAYSFTS  60
   61 PFYKPIVQIP DANKKLKQSA GRGCTKMKFK VSKSNHDLLK SNKSYKLYLF SGFSIPFIYE 120
  121 TVGHEAIDFP YPCELVFNGT KLEDNVKGLK KQNGTGNPAN LTPYLKVPTE MNHLDLHYLN 180
  181 IDKEYSISCF IVEVFSPEAL LGKILKRPKI IKQATTAYIK RTLNEQDDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [326-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIITTSTVLS LQCPISCTRM KYPAKTDQCK HIQCFDALWF LHSQSQVPTW QCPICQHPIK  60
   61 FD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.080922
Match: PF02891
Description: MIZ zinc finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.842 N/A N/A d.15.7 Immunoglobulin-binding domains

Predicted Domain #4
Region A:
Residues: [388-726]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLKISEFVDN IIQNCNEDVE QVEISVDGSW KPIHNSSAVI TDTVNQNHSV KNENQGTVKQ  60
   61 EQDYDSRNAF DTNLRNGSNH NEPEIISLDS SDDEAFIPAS KSFPTHVNPR NDQLRADIFP 120
  121 SESEGSSDYN PNHTSTPKGS PTMDQDNYQD AFQMRSFLNQ GATTNINDTP TNNSSINSFV 180
  181 TATNGDSRIF YNRGPSTPLL PAVLQNLTNQ TEAQRNPYGP NYNTTAQDRN LLGIEGDLPP 240
  241 IPPVDPNSEA ETELPTRTTS AAHLPPYIHV STSGHGDDGK IRKRRHSNVS IYIPKNPYAT 300
  301 LMKRRPQANH AIMNKTLAQT NDFNTSAQDN SEVVDLTSD

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 12.93
Match:
Description: No description for 1i3qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle