YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL23
Organism:	Saccharomyces cerevisiae
Length:	163 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL23.

Description	E-value	Query Range	Subject Range
gi\|224503610 - gi\|224503610\|ref\|ZP_03671917.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL R2-561] gi\|254854198 - gi\|254854198\|ref\|ZP_05243546.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL R2-503] RL13_LISMC - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rplM PE=3 SV=1 gi\|254877845 - gi\|254877845\|ref\|ZP_05250555.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-071] RL13_LISMC - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplM PE=3 SV=1 gi\|254825042 - gi\|254825042\|ref\|ZP_05230043.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-194] gi\|255025628 - gi\|255025628\|ref\|ZP_05297614.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-003] RL13_LISMF - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplM PE=3 SV=1 gi\|255029030 - gi\|255029030\|ref\|ZP_05300981.1\| 50S ribosomal protein L13 [Listeria monocytogenes LO28] RL13_LISMO - 50S ribosomal protein L13 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rp... gi\|126941782, gi... - gi\|254899952\|ref\|ZP_05259876.1\| 50S ribosomal protein L13 [Listeria monocytogenes J0161], gi\|1531856... RL13_LISMH - 50S ribosomal protein L13 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplM PE=3 SV=1 gi\|254992718 - gi\|254992718\|ref\|ZP_05274908.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J2-064] RL13_LISMO - 50S ribosomal protein L13 OS=Listeria monocytogenes GN=rplM PE=3 SV=1 RL13_LISW6 - 50S ribosomal protein L13 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC533... gi\|224499269 - gi\|224499269\|ref\|ZP_03667618.1\| 50S ribosomal protein L13 [Listeria monocytogenes Finland 1988] gi\|255022864 - gi\|255022864\|ref\|ZP_05294850.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-208] gi\|254912842, gi... - gi\|254912842\|ref\|ZP_05262854.1\| 50S ribosomal protein L13 [Listeria monocytogenes J2818], gi\|1531923... gi\|153197625, gi... - gi\|254830972\|ref\|ZP_05235627.1\| 50S ribosomal protein L13 [Listeria monocytogenes 10403S], gi\|153197... gi\|133728615, gi... - gi\|254829046\|ref\|ZP_05233733.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL N3-165], gi\|15... gi\|255520578 - gi\|255520578\|ref\|ZP_05387815.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL J1-175] gi\|254871299, gi... - gi\|254871299\|ref\|ZP_05244009.1\| 50S ribosomal protein L13 [Listeria monocytogenes FSL N1-017], gi\|15... gi\|153180761, gi... - gi\|254937222\|ref\|ZP_05268919.1\| 50S ribosomal protein L13 [Listeria monocytogenes F6900], gi\|1531807...	2.0E-49	[1..144]	[1..141]
RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua GN=rplM PE=3 SV=1 RL13_LISIN - 50S ribosomal protein L13 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rplM PE=3 SV=1	3.0E-49	[1..144]	[1..141]
RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL13_BACHD - 50S ribosomal protein L13 OS=Bacillus halodurans GN=rplM PE=3 SV=1	4.0E-49	[1..144]	[1..141]
RL13_RHIME - 50S ribosomal protein L13 OS=Rhizobium meliloti (strain 1021) GN=rplM PE=3 SV=1 RL13_RHIME - 50S ribosomal protein L13 OS=Rhizobium meliloti GN=rplM PE=3 SV=1	1.0E-48	[4..155]	[3..152]
RL13_RHILO - 50S ribosomal protein L13 OS=Rhizobium loti (strain MAFF303099) GN=rplM PE=3 SV=1 RL13_RHILO - 50S ribosomal protein L13 OS=Rhizobium loti GN=rplM PE=3 SV=1	1.0E-48	[3..155]	[2..152]
gi\|25295180 - pir\|\|AB2730 50S ribosomal protein L13 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) RL13_AGRFC - 50S ribosomal protein L13 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2	2.0E-48	[4..155]	[3..152]
RL13_PASMU - 50S ribosomal protein L13 OS=Pasteurella multocida (strain Pm70) GN=rplM PE=3 SV=1 RL13_PASMU - 50S ribosomal protein L13 OS=Pasteurella multocida GN=rplM PE=3 SV=1	4.0E-48	[3..145]	[2..141]
RL13_HISSO - 50S ribosomal protein L13 OS=Histophilus somni GN=rplM PE=3 SV=1	4.0E-48	[3..145]	[2..141]
RL13_YERPP - 50S ribosomal protein L13 OS=Yersinia pestis (strain Pestoides F) GN=rplM PE=3 SV=1 RL13_YERPS - 50S ribosomal protein L13 OS=Yersinia pseudotuberculosis GN=rplM PE=3 SV=1 gi\|229706019, gi... - gi\|229837076\|ref\|ZP_04457241.1\| 50S ribosomal subunit protein L13 [Yersinia pestis Pestoides A], gi\|... gi\|229839219, gi... - gi\|229839219\|ref\|ZP_04459378.1\| 50S ribosomal subunit protein L13 [Yersinia pestis biovar Orientalis... gi\|229687276, gi... - gi\|229899784\|ref\|ZP_04514925.1\| 50S ribosomal subunit protein L13 [Yersinia pestis biovar Orientalis... gi\|149288975, gi... - gi\|153997338\|ref\|ZP_02022438.1\| 50S ribosomal protein L13 [Yersinia pestis CA88-4125], gi\|149288975\|... gi\|165989798, gi... - gi\|166011414\|ref\|ZP_02232312.1\| ribosomal protein L13 [Yersinia pestis biovar Antiqua str. E1979001]... gi\|166211934, gi... - gi\|166211934\|ref\|ZP_02237969.1\| ribosomal protein L13 [Yersinia pestis biovar Antiqua str. B42003004... gi\|167050026, gi... - gi\|167400658\|ref\|ZP_02306167.1\| ribosomal protein L13 [Yersinia pestis biovar Antiqua str. UG05-0454... RL13_YERPG - 50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplM PE=3 SV=1 gi\|166961273, gi... - gi\|167420467\|ref\|ZP_02312220.1\| ribosomal protein L13 [Yersinia pestis biovar Orientalis str. MG05-1... RL13_YERP3 - 50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplM PE=... gi\|167054021, gi... - gi\|167426981\|ref\|ZP_02318734.1\| ribosomal protein L13 [Yersinia pestis biovar Mediaevalis str. K1973... RL13_YERPY - 50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplM PE=3 SV... RL13_YERPB - 50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplM PE=3 SV=... gi\|89102362, gi\|... - gi\|89102362\|ref\|ZP_01175002.1\| COG0102: Ribosomal protein L13 [Yersinia pestis biovar Orientalis str... RL13_YERPA - 50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplM PE=3 SV=1 RL13_YERPN - 50S ribosomal protein L13 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplM PE=3 SV=1 RL13_YERPE - 50S ribosomal protein L13 OS=Yersinia pestis GN=rplM PE=3 SV=1 gi\|161484916 - gi\|161484916\|ref\|NP_667477.2\| 50S ribosomal protein L13 [Yersinia pestis KIM] gi\|15981485, gi\|... - gi\|218930575\|ref\|YP_002348450.1\| 50S ribosomal protein L13 [Yersinia pestis CO92], gi\|16123707\|ref\|N... gi\|161511291 - gi\|161511291\|ref\|NP_995088.2\| 50S ribosomal protein L13 [Yersinia pestis biovar Microtus str. 91001] RL13_YERPS - 50S ribosomal protein L13 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rplM PE=3 SV... gi\|165928144, gi... - gi\|165928144\|ref\|ZP_02223976.1\| ribosomal protein L13 [Yersinia pestis biovar Orientalis str. F19910...	4.0E-48	[3..145]	[2..141]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKIGHSGL AFARLWHHVD VARDKRTLGR LASAIAITLI GRHKPVYHPS QDCGDYVVVT  60
   61 NCQKIRVTGK KFEQKTYWSH SGRPGQLKLQ TMNKVVADKG FGEILKKAVS GMLPKNKLRK 120
  121 QRLDRLKVFD GSENPYKQNI TAFAHEQSSI PEPLKESIFN QLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	186.533179
Match:	1lnrH_
Description:	No description for 1lnrH_ was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
nucleic acid binding	0.592978734154454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: