YRC Public Data Repository - Protein Structure Prediction

Protein:	HSP10
Organism:	Saccharomyces cerevisiae
Length:	106 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSP10.

Description	E-value	Query Range	Subject Range
CH15_RHIME, CH10... - (P35474) 10 kDa chaperonin 5 (Protein Cpn10 5) (groES protein 5), 10 kDa chaperonin 5 OS=Rhizobium m... CH105_RHIME - 10 kDa chaperonin 5 OS=Rhizobium meliloti (strain 1021) GN=groS5 PE=2 SV=2	2.0E-34	[11..104]	[3..95]
CH11_BRAJA, CH10... - (P77828) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1), 10 kDa chaperonin 1 OS=Bradyrhizob... CH101_BRADU - 10 kDa chaperonin 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / US...	1.0E-33	[11..105]	[3..96]
CH102_RHILO - 10 kDa chaperonin 2 OS=Rhizobium loti (strain MAFF303099) GN=groS2 PE=3 SV=1 CH12_RHILO, CH10... - (Q98II0) 10 kDa chaperonin 2 (Protein Cpn10 2) (groES protein 2), 10 kDa chaperonin 2 OS=Rhizobium l...	2.0E-33	[10..105]	[2..96]
CH10_SYNE7 - 10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2 gi\|72954 - pir\|\|BVYCGS chaperonin groES - Synechococcus sp. (strain PCC 6301) CH10_SYNP6 - 10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=...	3.0E-33	[1..103]	[1..102]
gi\|7578865 - gi\|7578865\|gb\|AAF64159.1\|AF239163_1 GroES [Rhizobium leguminosarum]	3.0E-33	[10..104]	[2..95]
gi\|154520, gi\|97572 - pir\|\|A36721 groES protein - Synechococcus sp. (strain PCC 7942), gi\|154520\|gb\|AAA27313.1\| chaperoni... CH10_SYNP7 - (P22880) 10 kDa chaperonin (Protein Cpn10) (groES protein)	2.0E-32	[1..103]	[1..102]
CH10_LAWIP - 10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1 CH10_LAWIN - 10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1	2.0E-32	[10..106]	[2..97]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLLKSAKS IVPLMDRVLV QRIKAQAKTA SGLYLPEKNV EKLNQAEVVA VGPGFTDANG  60
   61 NKVVPQVKVG DQVLIPQFGG STIKLGNDDE VILFRDAEIL AKIAKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	146.9897
Match:	1hx5A_
Description:	Chaperonin-10 (GroES)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	3.52404463833595	bayes_pls_golite062009
unfolded protein binding	2.30823619318536	bayes_pls_golite062009
binding	2.29520443217747	bayes_pls_golite062009
protein binding	1.35579823286173	bayes_pls_golite062009
catalytic activity	0.217171374336363	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: