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View Structure Prediction Details

Protein: SMF1
Organism: Saccharomyces cerevisiae
Length: 575 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMF1.

Description E-value Query
Range
Subject
Range
SMF1_YEAST - Manganese transporter SMF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMF1 PE=1 SV=...
SMF1 - Divalent metal ion transporter with a broad specificity for di-valent and tri-valent metals; post-tr...
0.0 [1..575] [1..575]
gi|4433391 - gi|4433391|gb|AAD20722.1| natural resistance associated macrophage protein-beta [Oncorhynchus mykiss...
0.0 [24..496] [6..467]
gi|6273404 - gi|6273404|emb|CAB60196.1| putative natural resistance-associated macrophage protein [Cyprinus carpi...
0.0 [38..496] [15..461]
NRAM2_MOUSE - Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2
0.0 [41..496] [29..473]
gi|57164361, gi|... - gi|57164361|ref|NP_001009345.1| natural resistance associated macrophage protein [Ovis aries], gi|40...
0.0 [44..496] [40..482]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVGPSHAA VAVDASEARK RNISEEVFEL RDKKDSTVVI EGEAPVRTFT SSSSNHERED  60
   61 TYVSKRQVMR DIFAKYLKFI GPGLMVSVAY IDPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYSTAVDAGA SNQFSLLCII LLSNFIAIFL QCLCIKLGSV TGLDLSRACR EYLPRWLNWT  60
   61 LYFFAECAVI ATDIAEVIGT AIALNILIKV PLPAGVAITV VDVFLIMFTY KPGASSIRFI 120
  121 RIFECFVAVL VVGVCICFAI ELAYIPKSTS VKQVFRGFVP SAQMFDHNGI YTAISILGAT 180
  181 VMPHSLFLGS ALVQPRLLDY DVKHGNYTVS EEQDKVKKSK STEEIMEEKY FNYRPTNAAI 240
  241 KYCMKYSMVE LSITLFTLAL FVNCAILVVA GSTLYNSPEA DGADLFTIHE LLSRNLAPAA 300
  301 GTIFMLALLL SGQSAGVVCT MSGQIVSEGH INWKLQPWQR RLATRCISII PCLVISICIG 360
  361 REALSKALNA SQVVLSIVLP FLVAPLIFFT CKKSIMKTEI TVDHTEEDSH NH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 245.60206
Match: PF01566
Description: Natural resistance-associated macrophage protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [507-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNNNDRSAGS VIEQDGSSGM EIENGKDVKI VYMANNWIIT VIAIIVWLFL SLLNVYAIVQ  60
   61 LGMSHGDIS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle