| Protein: | SMF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 575 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..575] | [1..575] |
|
|
0.0 | [24..496] | [6..467] |
|
|
0.0 | [38..496] | [15..461] |
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0.0 | [41..496] | [29..473] |
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0.0 | [44..496] | [40..482] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MVNVGPSHAA VAVDASEARK RNISEEVFEL RDKKDSTVVI EGEAPVRTFT SSSSNHERED 60
61 TYVSKRQVMR DIFAKYLKFI GPGLMVSVAY IDPG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.667 | a.64.1 | Saposin |
| View | Download | 0.560 | a.47.2 | t-snare proteins |
| View | Download | 0.557 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.604 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.463 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.460 | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.459 | d.94.1 | HPr-like |
| View | Download | 0.443 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.440 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.396 | d.93.1 | SH2 domain |
| View | Download | 0.391 | d.58.5 | GlnB-like |
| View | Download | 0.382 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.367 | a.7.7 | BAG domain |
| View | Download | 0.365 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.357 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.357 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.351 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.345 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.345 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.337 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.331 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.324 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.313 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.313 | d.66.1 | Alpha-L RNA-binding motif |
| View | Download | 0.313 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.311 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.309 | a.7.1 | Spectrin repeat |
| View | Download | 0.298 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.293 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.291 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.283 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.277 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.273 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.269 | d.13.1 | HIT-like |
| View | Download | 0.268 | d.58.5 | GlnB-like |
| View | Download | 0.259 | b.6.1 | Cupredoxins |
| View | Download | 0.259 | d.26.1 | FKBP-like |
| View | Download | 0.249 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.245 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.244 | a.7.1 | Spectrin repeat |
| View | Download | 0.242 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.240 | a.64.1 | Saposin |
| View | Download | 0.237 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.235 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.223 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.223 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.221 | a.7.8 | GAT domain |
| View | Download | 0.220 | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.219 | a.4.3 | ARID-like |
| View | Download | 0.218 | a.39.3 | Cloroperoxidase |
| View | Download | 0.213 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.213 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.211 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.209 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.208 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.208 | a.1.1 | Globin-like |
| View | Download | 0.208 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.204 | a.29.2 | Bromodomain |
|
Region A: Residues: [95-506] |
1 11 21 31 41 51
| | | | | |
1 NYSTAVDAGA SNQFSLLCII LLSNFIAIFL QCLCIKLGSV TGLDLSRACR EYLPRWLNWT 60
61 LYFFAECAVI ATDIAEVIGT AIALNILIKV PLPAGVAITV VDVFLIMFTY KPGASSIRFI 120
121 RIFECFVAVL VVGVCICFAI ELAYIPKSTS VKQVFRGFVP SAQMFDHNGI YTAISILGAT 180
181 VMPHSLFLGS ALVQPRLLDY DVKHGNYTVS EEQDKVKKSK STEEIMEEKY FNYRPTNAAI 240
241 KYCMKYSMVE LSITLFTLAL FVNCAILVVA GSTLYNSPEA DGADLFTIHE LLSRNLAPAA 300
301 GTIFMLALLL SGQSAGVVCT MSGQIVSEGH INWKLQPWQR RLATRCISII PCLVISICIG 360
361 REALSKALNA SQVVLSIVLP FLVAPLIFFT CKKSIMKTEI TVDHTEEDSH NH
|
| Detection Method: | |
| Confidence: | 245.60206 |
| Match: | PF01566 |
| Description: | Natural resistance-associated macrophage protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [507-575] |
1 11 21 31 41 51
| | | | | |
1 QNNNDRSAGS VIEQDGSSGM EIENGKDVKI VYMANNWIIT VIAIIVWLFL SLLNVYAIVQ 60
61 LGMSHGDIS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.351 | a.4.1 | Homeodomain-like |
| View | Download | 0.539 | g.7.1 | Snake toxin-like |
| View | Download | 0.377 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.369 | d.10.1 | DNA-binding domain |
| View | Download | 0.284 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.276 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.244 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.232 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.218 | g.44.1 | RING/U-box |
