| Protein: | MDY2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 212 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDY2.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-57 | [13..153] | [355..498] |
|
|
4.0E-56 | [13..212] | [187..393] |
|
|
5.0E-55 | [13..212] | [38..244] |
|
|
2.0E-54 | [13..212] | [85..291] |
|
|
2.0E-54 | [13..212] | [9..215] |
|
|
2.0E-54 | [13..212] | [9..215] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MSTSASGPEH EFVSKFLTLA TLTEPKLPKS YTKPLKDVTN LGVPLPTLKY KYKQNRAKKL 60
61 KLHQDQQGQD NA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.63877637096497 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.26268915216809 | bayes_pls_golite062009 |
| structural molecule activity | 1.89635407400581 | bayes_pls_golite062009 |
| protein binding | 1.89134588490127 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.729632027931987 | bayes_pls_golite062009 |
| tubulin binding | 0.0390794819499503 | bayes_pls_golite062009 |
|
Region A: Residues: [73-212] |
1 11 21 31 41 51
| | | | | |
1 AVHLTLKKIQ APKFSIEHDF SPSDTILQIK QHLISEEKAS HISEIKLLLK GKVLHDNLFL 60
61 SDLKVTPANS TITVMIKPNP TISKEPEAEK STNSPAPAPP QELTVPWDDI EALLKNNFEN 120
121 DQAAVRQVME RLQKGWSLAK
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 1aarA_ |
| Description: | Ubiquitin |
Matching Structure (courtesy of the PDB): |
|
