YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ10
Organism:	Saccharomyces cerevisiae
Length:	207 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ10.

Description	E-value	Query Range	Subject Range
gi\|151945622 - gi\|151945622\|gb\|EDN63863.1\| coenzyme Q [Saccharomyces cerevisiae YJM789] gi\|207341307 - gi\|207341307\|gb\|EDZ69400.1\| YOL008Wp-like protein [Saccharomyces cerevisiae AWRI1631] COQ10 - Coenzyme Q (ubiquinone) binding protein, functions in the delivery of Q<sub>6</sub> to its proper lo... COQ10_YEAST - Coenzyme Q-binding protein COQ10, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	9.0E-66	[1..207]	[1..207]
COQ10B - coenzyme Q10 homolog B (S. cerevisiae)	2.0E-60	[8..194]	[45..221]
gi\|12839713, gi\|... - gi\|27754063\|ref\|NP_080700.2\| hypothetical protein LOC67876 [Mus musculus], gi\|12839713\|dbj\|BAB24648....	8.0E-47	[52..194]	[38..175]
gi\|194447318, gi... - gi\|194447318\|ref\|YP_002046690.1\| hypothetical protein SeHA_C2902 [Salmonella enterica subsp. enteric... gi\|194404757, gi... - gi\|194446094\|ref\|YP_002041948.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su... gi\|205360491, gi... - gi\|205360491\|ref\|ZP_03224639.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|205340651, gi... - gi\|205360172\|ref\|ZP_03224541.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|205336454, gi... - gi\|205359387\|ref\|ZP_03224285.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|62128890, gi\|... - gi\|62181257\|ref\|YP_217674.1\| hypothetical protein SC2687 [Salmonella enterica subsp. enterica serova... gi\|205358806, gi... - gi\|205358806\|ref\|ZP_03224145.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|224584538, gi... - gi\|224584538\|ref\|YP_002638336.1\| hypothetical protein SPC_2797 [Salmonella enterica subsp. enterica ... gi\|206709837, gi... - gi\|207858034\|ref\|YP_002244685.1\| hypothetical protein SEN2607 [Salmonella enterica subsp. enterica s... gi\|197263935, gi... - gi\|197263935\|ref\|ZP_03164009.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=yfjG] [protein=hypothetical protein] [protein_id=YP_005238812.1] [location=complement(2879775.... gi\|197248003, gi... - gi\|197248003\|ref\|YP_002147622.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su... gi\|195873600, gi... - gi\|195873600\|ref\|ZP_03080069.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|194470421, gi... - gi\|194470421\|ref\|ZP_03076405.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|29143010, gi\|... - gi\|29143010\|ref\|NP_806352.1\| hypothetical protein t2641 [Salmonella enterica subsp. enterica serovar... gi\|205357815, gi... - gi\|205357815\|ref\|ZP_03223847.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|16761539 - gi\|16761539\|ref\|NP_457156.1\| hypothetical protein STY2873 [Salmonella enterica subsp. enterica serov... gi\|205353723, gi... - gi\|205353723\|ref\|YP_002227524.1\| hypothetical protein SG2664 [Salmonella enterica subsp. enterica se... gi\|16503840, gi\|... - gi\|25348181\|pir\|\|AB0835 conserved hypothetical protein STY2873 [imported] - Salmonella enterica subs... gi\|200388148, gi... - gi\|200388148\|ref\|ZP_03214760.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica sub... gi\|16766002, gi\|... - gi\|16766002\|ref\|NP_461617.1\| hypothetical protein STM2687 [Salmonella typhimurium LT2], gi\|16421234\|... gi\|197939657, gi... - gi\|198245141\|ref\|YP_002216695.1\| polyketide cyclase/dehydrase family protein [Salmonella enterica su...	3.0E-45	[31..194]	[9..156]
CG9410-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9410 (CG9410, FBgn0033086). It is a protein...	3.0E-44	[29..187]	[35..186]
gi\|15803139, gi\|... - gi\|15803139\|ref\|NP_289171.1\| hypothetical protein Z3912 [Escherichia coli O157:H7 EDL933], gi\|125170... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7], gi\|13362952\|db... gi\|218555198, gi... - gi\|218555198\|ref\|YP_002388111.1\| hypothetical protein ECIAI1_2740 [Escherichia coli IAI1], gi\|218361... gi\|218352974, gi... - gi\|218696242\|ref\|YP_002403909.1\| hypothetical protein EC55989_2907 [Escherichia coli 55989], gi\|2183... gi\|208814184, gi... - gi\|208814184\|ref\|ZP_03255513.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|208821713, gi... - gi\|208821713\|ref\|ZP_03262033.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|209396556, gi... - gi\|209396556\|ref\|YP_002272088.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:... gi\|217327876, gi... - gi\|217327876\|ref\|ZP_03443959.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|51773740 - gi\|51773740\|emb\|CAH23265.1\| hypothetical protein [Escherichia coli] gi\|209762460, gi... - pir\|\|E85908 hypothetical protein Z3912 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|194414071, gi... - gi\|194427838\|ref\|ZP_03060384.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B171],... gi\|73856654, gi\|... - gi\|74313177\|ref\|YP_311596.1\| hypothetical protein SSON_2744 [Shigella sonnei Ss046], gi\|73856654\|gb\|... gi\|194433023, gi... - gi\|194433023\|ref\|ZP_03065306.1\| polyketide cyclase/dehydrase family protein [Shigella dysenteriae 10... gi\|195939670 - gi\|195939670\|ref\|ZP_03085052.1\| hypothetical protein EscherichcoliO157_25245 [Escherichia coli O157:... gi\|208808479, gi... - gi\|208808479\|ref\|ZP_03250816.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|189377151, gi... - gi\|189377151\|gb\|EDU95567.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|191167063, gi... - gi\|191167063\|ref\|ZP_03028884.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B7A], ... gi\|81242125, gi\|... - gi\|82777977\|ref\|YP_404326.1\| hypothetical protein SDY_2792 [Shigella dysenteriae Sd197], gi\|81242125... gi\|192926406, gi... - gi\|193065992\|ref\|ZP_03047051.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E22], ... gi\|82545162, gi\|... - gi\|82545162\|ref\|YP_409109.1\| hypothetical protein SBO_2754 [Shigella boydii Sb227], gi\|81246573\|gb\|A... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|192955414, gi... - gi\|193071261\|ref\|ZP_03052181.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E11001... gi\|168768706, gi... - gi\|189362021\|gb\|EDU80440.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|187769571, gi... - gi\|187769571\|gb\|EDU33415.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189003569, gi... - gi\|189003569\|gb\|EDU72555.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189370851, gi... - gi\|189370851\|gb\|EDU89267.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|254794564, gi... - gi\|254794564\|ref\|YP_003079401.1\| hypothetical protein ECSP_3563 [Escherichia coli O157:H7 str. TW143... gi\|168752579, gi... - gi\|188013616\|gb\|EDU51738.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189357236, gi... - gi\|189357236\|gb\|EDU75655.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|168762411, gi... - gi\|189367230\|gb\|EDU85646.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st...	3.0E-44	[31..193]	[9..155]
gi\|229697403, gi... - gi\|229841037\|ref\|ZP_04461196.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229689488, gi... - gi\|229843141\|ref\|ZP_04463287.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229893979, gi... - gi\|229893979\|ref\|ZP_04509165.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703864\|gb\|EEO... gi\|149291272, gi... - gi\|149366898\|ref\|ZP_01888932.1\| hypothetical protein YPE_2152 [Yersinia pestis CA88-4125], gi\|149291... gi\|165924650, gi... - gi\|165924650\|ref\|ZP_02220482.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|145211556, gi... - gi\|145599860\|ref\|YP_001163936.1\| hypothetical protein YPDSF_2595 [Yersinia pestis Pestoides F], gi\|1... gi\|229903497, gi... - gi\|229903497\|ref\|ZP_04518610.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679267\|gb\|EEO753... gi\|77636439, gi\|... - gi\|77636439\|ref\|ZP_00798513.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|89105213, gi\|... - gi\|89105213\|ref\|ZP_01177737.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pestis... gi\|108806577, gi... - gi\|108806577\|ref\|YP_650493.1\| hypothetical protein YPA_0580 [Yersinia pestis Antiqua], gi\|108778490\|... Q66DB3\|Q66DB3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|166211450, gi... - gi\|166211450\|ref\|ZP_02237485.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|165989480, gi... - gi\|166011532\|ref\|ZP_02232430.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|167419468, gi... - gi\|167419468\|ref\|ZP_02311221.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Orient... gi\|167400072, gi... - gi\|167400072\|ref\|ZP_02305590.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Antiqu... gi\|51595480, gi\|... - gi\|51595480\|ref\|YP_069671.1\| hypothetical protein YPTB1136 [Yersinia pseudotuberculosis IP 32953], g... gi\|170025201, gi... - gi\|170025201\|ref\|YP_001721706.1\| hypothetical protein YPK_2979 [Yersinia pseudotuberculosis YPIII], ... gi\|25348179 - pir\|\|AF0135 conserved hypothetical protein YPO1102 [imported] - Yersinia pestis (strain CO92) gi\|167057147, gi... - gi\|167424298\|ref\|ZP_02316051.1\| putative polyketide cyclase/dehydrase [Yersinia pestis biovar Mediae... gi\|115346881, gi... - gi\|218928270\|ref\|YP_002346145.1\| hypothetical protein YPO1102 [Yersinia pestis CO92], gi\|16121402\|re... gi\|186894533, gi... - gi\|186894533\|ref\|YP_001871645.1\| hypothetical protein YPTS_1213 [Yersinia pseudotuberculosis PB1/+],...	5.0E-44	[43..193]	[1..142]
gi\|124528017, gi... - gi\|124528017\|ref\|ZP_01699370.1\| cyclase/dehydrase [Escherichia coli B], gi\|124500909\|gb\|EAY48377.1\| ... EG13193 - toxic UPF0083 family protein inhibitor of 70S ribosome formation / Toxic protein, inhibits 70S ribos... YFJG_ECOLI - UPF0083 protein yfjG - Escherichia coli RATA_SHIFL - Ribosome association toxin RatA OS=Shigella flexneri GN=ratA PE=3 SV=1 gi\|194421629, gi... - gi\|194439453\|ref\|ZP_03071529.1\| polyketide cyclase/dehydrase family protein [Escherichia coli 101-1]... gi\|238860364, gi... - gi\|238901778\|ref\|YP_002927574.1\| hypothetical protein BWG_2377 [Escherichia coli BW2952], gi\|2388603... gi\|218547863, gi... - gi\|218547863\|ref\|YP_002381654.1\| hypothetical protein EFER_0454 [Escherichia fergusonii ATCC 35469],... gi\|242378213, gi... - gi\|251785940\|ref\|YP_003000244.1\| hypothetical protein B21_02471 [Escherichia coli BL21], gi\|24237821... gi\|24113956, gi\|... - ref\|NP_708466.1\| hypothetical protein SF2678 [Shigella flexneri 2a str. 301], gb\|AAN44173.1\| orf, c... gi\|218701130, gi... - gi\|218701130\|ref\|YP_002408759.1\| hypothetical protein ECIAI39_2822 [Escherichia coli IAI39], gi\|2183... EG13193 - toxic UPF0083 family protein inhibitor of 70S ribosome formation / Toxic protein, inhibits 70S ribos... gi\|218433216, gi... - gi\|218706119\|ref\|YP_002413638.1\| hypothetical protein ECUMN_2943 [Escherichia coli UMN026], gi\|21843... gi\|253974489, gi... - gi\|254162588\|ref\|YP_003045696.1\| hypothetical protein ECB_02507 [Escherichia coli B str. REL606], gi... gi\|169754033, gi... - gi\|170019105\|ref\|YP_001724059.1\| hypothetical protein EcolC_1065 [Escherichia coli ATCC 8739], gi\|16... gi\|253772488, gi... - gi\|254289349\|ref\|YP_003055097.1\| hypothetical protein ECD_02507 [Escherichia coli BL21(DE3)], gi\|253... gi\|89109419, gi\|... - gi\|89109419\|ref\|AP_003199.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|180... gi\|169890056, gi... - gi\|170082221\|ref\|YP_001731541.1\| hypothetical protein ECDH10B_2785 [Escherichia coli str. K-12 subst... gi\|226839318, gi... - gi\|254037694\|ref\|ZP_04871752.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683931...	6.0E-44	[31..193]	[9..155]
gi\|15236600 - gi\|15236600\|ref\|NP_193500.1\| aromatic-rich family protein [Arabidopsis thaliana]	8.0E-43	[44..194]	[98..242]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLIIRPSQT LILFRKAMLK PIGRYPLKRN FFGLSGTNHT IREQRYVLRK AINAPPSTVY  60
   61 AAVSEVAQYK EFIPYCVDSF VDKRNPVDNK PLIAGLRVGF KQYDEEFICN VTCKDTDHTY 120
  121 TVVAETISHN LFHLLISKWT IMPHPNRPNA AMVELLLRFK FKSRIYNSVS LIFAKTVTEL 180
  181 VMNAFAKRAY HLVRLAMLKP SSKEGSP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.568636
Match:	PF03654
Description:	No description for PF03654 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	0.453951550198712	bayes_pls_golite062009
catalytic activity	0.0116392906163881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: