YRC Public Data Repository - Protein Structure Prediction

Protein:	RSM19
Organism:	Saccharomyces cerevisiae
Length:	91 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM19.

Description	E-value	Query Range	Subject Range
RS19_NOSS1 - 30S ribosomal protein S19 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsS PE=3 SV=1 gi\|25294862 - pir\|\|AD2332 30S ribosomal protein S19 [imported] - Nostoc sp. (strain PCC 7120)	6.0E-31	[8..91]	[1..89]
RS19_SYNP6 - 30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsS ... gi\|2446894 - gi\|2446894\|dbj\|BAA22453.1\| 30S ribosomal protein S19 [Synechococcus sp.] RS19_SYNE7 - 30S ribosomal protein S19 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsS PE=3 SV=1	6.0E-31	[8..90]	[1..88]
RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans GN=rpsS PE=3 SV=1	2.0E-30	[8..91]	[1..89]
RS19_LISMO - 30S ribosomal protein S19 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rp... RS19_LISIN - 30S ribosomal protein S19 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsS PE=3 SV=1 RS19_LISMC - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsS PE=3 SV=1 RS19_LISMC - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsS PE=3 SV=1 gi\|254825011 - gi\|254825011\|ref\|ZP_05230012.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-194] gi\|254991850 - gi\|254991850\|ref\|ZP_05274040.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J2-064] gi\|255023227 - gi\|255023227\|ref\|ZP_05295213.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-208] gi\|254854166 - gi\|254854166\|ref\|ZP_05243514.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL R2-503] gi\|254877814 - gi\|254877814\|ref\|ZP_05250524.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J2-071] gi\|255030704 - gi\|255030704\|ref\|ZP_05302655.1\| 30S ribosomal protein S19 [Listeria monocytogenes LO28] gi\|255519644 - gi\|255519644\|ref\|ZP_05386881.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-175] gi\|254899921, gi... - gi\|254899921\|ref\|ZP_05259845.1\| 30S ribosomal protein S19 [Listeria monocytogenes J0161], gi\|1531856... RS19_LISW6 - 30S ribosomal protein S19 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC533... gi\|254912873, gi... - gi\|254912873\|ref\|ZP_05262885.1\| 30S ribosomal protein S19 [Listeria monocytogenes J2818], gi\|1531923... gi\|224503578 - gi\|224503578\|ref\|ZP_03671885.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL R2-561] gi\|153197656, gi... - gi\|254830940\|ref\|ZP_05235595.1\| 30S ribosomal protein S19 [Listeria monocytogenes 10403S], gi\|153197... gi\|224499301 - gi\|224499301\|ref\|ZP_03667650.1\| 30S ribosomal protein S19 [Listeria monocytogenes Finland 1988] gi\|133728647, gi... - gi\|254829077\|ref\|ZP_05233764.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL N3-165], gi\|15... gi\|133726027, gi... - gi\|254871331\|ref\|ZP_05244041.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL N1-017], gi\|15... gi\|254931102, gi... - gi\|254931102\|ref\|ZP_05264461.1\| 30S ribosomal protein S19 [Listeria monocytogenes HPB2262], gi\|15320... gi\|133731739, gi... - gi\|254937253\|ref\|ZP_05268950.1\| 30S ribosomal protein S19 [Listeria monocytogenes F6900], gi\|1531807... RS19_LISMH - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsS PE=3 SV=1 RS19_LISMF - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsS PE=3 SV=1 RS19_LISMO - 30S ribosomal protein S19 OS=Listeria monocytogenes GN=rpsS PE=3 SV=1 RS19_LISIN - 30S ribosomal protein S19 OS=Listeria innocua GN=rpsS PE=3 SV=1	6.0E-30	[8..91]	[1..89]
RS19_LACLA - 30S ribosomal protein S19 OS=Lactococcus lactis subsp. lactis GN=rpsS PE=3 SV=1 RS19_LACLA - 30S ribosomal protein S19 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rpsS PE=3 SV=1	6.0E-30	[8..91]	[1..89]
RS19_GEOSE - 30S ribosomal protein S19 OS=Geobacillus stearothermophilus GN=rpsS PE=1 SV=3	7.0E-30	[8..91]	[1..89]
RS19_STAAM - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsS PE=3 SV=1 RS19_STAAN - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain N315) GN=rpsS PE=1 SV=1 gi\|221140152 - gi\|221140152\|ref\|ZP_03564645.1\| 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus str. ... gi\|253317006 - gi\|253317006\|ref\|ZP_04840219.1\| 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus str. ... gi\|221138948 - gi\|221138948\|ref\|ZP_03563749.1\| 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus str. ... gi\|255007026 - gi\|255007026\|ref\|ZP_05145627.2\| 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus Mu50-... RS19_STAAR - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain MRSA252) GN=rpsS PE=3 SV=1 RS19_STAAS - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain MSSA476) GN=rpsS PE=3 SV=1 gi\|25294848 - pir\|\|A90022 30S ribosomal protein S19 [imported] - Staphylococcus aureus (strain N315) RS19_STAA9 - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain JH9) GN=rpsS PE=3 SV=1 RS19_STAA8 - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsS PE=3 SV=1 RS19_STAA3 - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain USA300) GN=rpsS PE=3 SV=1 RS19_STAAB - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsS PE=3 SV=1 gi\|87162298\|ref\|... - 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus USA300], 30S ribosomal protein S19 [S... RS19_STAAC - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain COL) GN=rpsS PE=3 SV=1 RS19_STAAW - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain MW2) GN=rpsS PE=3 SV=1 RS19_STAA1 - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsS PE=3 SV=1 RS19_STAAE - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain Newman) GN=rpsS PE=3 SV=1 gi\|269203879\|ref... - 30S ribosomal protein S19 [Staphylococcus aureus subsp. aureus ED98] RS19_STAA2 - 30S ribosomal protein S19 OS=Staphylococcus aureus (strain JH1) GN=rpsS PE=3 SV=1	2.0E-29	[8..91]	[1..89]
RS19_BRUSU - 30S ribosomal protein S19 OS=Brucella suis GN=rpsS PE=3 SV=1 RS19_BRUME - 30S ribosomal protein S19 OS=Brucella melitensis GN=rpsS PE=3 SV=1 RS19_BRUSU - 30S ribosomal protein S19 OS=Brucella suis biovar 1 (strain 1330) GN=rpsS PE=3 SV=1 RS19_RHIME - 30S ribosomal protein S19 OS=Rhizobium meliloti (strain 1021) GN=rpsS PE=3 SV=1 RS19_BRUME - 30S ribosomal protein S19 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... RS19_SINMW - 30S ribosomal protein S19 OS=Sinorhizobium medicae (strain WSM419) GN=rpsS PE=3 SV=1 RS19_BRUSI - 30S ribosomal protein S19 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsS PE=3 SV=1 RS19_BRUC2 - 30S ribosomal protein S19 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsS PE=3 SV=1 RS19_BRUA2 - 30S ribosomal protein S19 OS=Brucella abortus (strain 2308) GN=rpsS PE=3 SV=1 RS19_BRUAB - 30S ribosomal protein S19 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsS PE=3 SV=1 RS19_BRUAB - 30S ribosomal protein S19 OS=Brucella abortus GN=rpsS PE=3 SV=1 RS19_RHIME - 30S ribosomal protein S19 OS=Rhizobium meliloti GN=rpsS PE=3 SV=1 RS19_BRUMB - 30S ribosomal protein S19 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsS PE=3 SV=1 gi\|225617704, gi... - gi\|225627699\|ref\|ZP_03785736.1\| ribosomal protein S19 [Brucella ceti str. Cudo], gi\|225617704\|gb\|EEH... gi\|237788946, gi... - gi\|237815648\|ref\|ZP_04594645.1\| ribosomal protein S19 [Brucella abortus str. 2308 A], gi\|237788946\|g... RS19_RHISN - 30S ribosomal protein S19 OS=Rhizobium sp. (strain NGR234) GN=rpsS PE=3 SV=1 gi\|254693934 - gi\|254693934\|ref\|ZP_05155762.1\| 30S ribosomal protein S19 [Brucella abortus bv. 3 str. Tulya] gi\|254689449 - gi\|254689449\|ref\|ZP_05152703.1\| 30S ribosomal protein S19 [Brucella abortus bv. 6 str. 870] gi\|254701970 - gi\|254701970\|ref\|ZP_05163798.1\| 30S ribosomal protein S19 [Brucella suis bv. 5 str. 513] gi\|254697584 - gi\|254697584\|ref\|ZP_05159412.1\| 30S ribosomal protein S19 [Brucella abortus bv. 2 str. 86/8/59] RS19_BRUA1 - 30S ribosomal protein S19 OS=Brucella abortus (strain S19) GN=rpsS PE=3 SV=1 gi\|254710300 - gi\|254710300\|ref\|ZP_05172111.1\| 30S ribosomal protein S19 [Brucella pinnipedialis B2/94] gi\|254704514 - gi\|254704514\|ref\|ZP_05166342.1\| 30S ribosomal protein S19 [Brucella suis bv. 3 str. 686] gi\|254717734 - gi\|254717734\|ref\|ZP_05179545.1\| 30S ribosomal protein S19 [Brucella ceti M13/05/1] gi\|254714297 - gi\|254714297\|ref\|ZP_05176108.1\| 30S ribosomal protein S19 [Brucella ceti M644/93/1] gi\|254730478 - gi\|254730478\|ref\|ZP_05189056.1\| 30S ribosomal protein S19 [Brucella abortus bv. 4 str. 292] gi\|254719287 - gi\|254719287\|ref\|ZP_05181098.1\| 30S ribosomal protein S19 [Brucella sp. 83/13]	2.0E-29	[8..90]	[1..88]
RS19_SYNY3 - 30S ribosomal protein S19 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsS PE=3 SV=1 RS19_SYNY3 - 30S ribosomal protein S19 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rpsS PE=3 SV=... gi\|7440514 - pir\|\|S77498 ribosomal protein S19 - Synechocystis sp. (strain PCC 6803)	2.0E-29	[8..91]	[1..89]
RS19_STRP1 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M1 GN=rpsS PE=3 SV=1 RS19_STRP3 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M3 GN=rpsS PE=3 SV=1 RS19_STRP6 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M6 GN=rpsS PE=3 SV=2 RS19_STRP8 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M18 GN=rpsS PE=3 SV=1 RS19_STRA1 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype Ia GN=rpsS PE=3 SV=1 RS19_STRPB - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsS PE=3 SV=2 RS19_STRPC - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsS PE=3 SV=2 RS19_STRPD - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsS PE=3 SV=2 RS19_STRPF - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsS PE=3 SV=2 RS19_STRS7 - 30S ribosomal protein S19 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsS PE=3 SV=1 RS19_STRPM - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M28 GN=rpsS PE=3 SV=2 gi\|171778379, gi... - gi\|171778379\|ref\|ZP_02919558.1\| hypothetical protein STRINF_00409 [Streptococcus infantarius subsp. ... RS19_STRU0 - 30S ribosomal protein S19 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsS PE=3 SV=1 RS19_STRP6 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... RS19_STRPM - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rpsS PE=3 SV=2 RS19_STRPG - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsS PE=3 SV=1 RS19_STRPQ - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rpsS PE=3 SV=1 RS19_STRA5 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN... RS19_STRA3 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=rpsS PE=3 SV=1 gi\|15674291, gi\|... - gi\|15674291\|ref\|NP_268464.1\| 30S ribosomal protein S19 [Streptococcus pyogenes M1 GAS], gi\|13621372\|... gi\|55737886, gi\|... - gb\|AAV63443.1\| 30S ribosomal protein S19 [Streptococcus thermophilus CNRZ1066], gb\|AAV61528.1\| 30S ... gi\|71909862, gi\|... - gi\|71909862\|ref\|YP_281412.1\| 30S ribosomal protein S19 [Streptococcus pyogenes MGAS5005], gi\|7185264... RS19_STRA1 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS... RS19_STRT2 - 30S ribosomal protein S19 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsS PE... gi\|77159376, gi\|... - gi\|77414578\|ref\|ZP_00790721.1\| ribosomal protein S19 [Streptococcus agalactiae 515], gi\|77159376\|gb\|... gi\|225867669, gi... - gi\|225867669\|ref\|YP_002743617.1\| 30S ribosomal protein S19 [Streptococcus equi subsp. zooepidemicus]... gi\|77161661, gi\|... - gi\|77412271\|ref\|ZP_00788587.1\| ribosomal protein S19 [Streptococcus agalactiae CJB111], gi\|77161661\|... RS19_STRE4 - 30S ribosomal protein S19 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsS PE=3 SV=1 RS19_STRPY - (P66496) 30S ribosomal protein S19 gi\|77409637, gi\|... - gi\|77409637\|ref\|ZP_00786310.1\| ribosomal protein S19 [Streptococcus agalactiae COH1], gi\|77171760\|gb... gi\|228478014, gi... - gi\|228478014\|ref\|ZP_04062625.1\| ribosomal protein S19 [Streptococcus salivarius SK126], gi\|228250194... gi\|77406109, gi\|... - gi\|77406109\|ref\|ZP_00783183.1\| ribosomal protein S19 [Streptococcus agalactiae H36B], gi\|77175290\|gb... gi\|76586443, gi\|... - gi\|76798234\|ref\|ZP_00780484.1\| ribosomal protein S19 [Streptococcus agalactiae 18RS21], gi\|76586443\|... RS19_STRP3 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RS19_STRP8 - 30S ribosomal protein S19 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rpsS PE=3 SV=1 RS19_STREM - 30S ribosomal protein S19 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsS PE=3... RS19_STRA3 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype III GN=rpsS PE=3 SV=1 RS19_STRA5 - 30S ribosomal protein S19 OS=Streptococcus agalactiae serotype V GN=rpsS PE=3 SV=1 RS19_STRT1 - 30S ribosomal protein S19 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsS PE=3 SV=1	3.0E-29	[8..91]	[1..89]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPAARLLSR SVWKGPNIVP LPIREAMTKG TPIRTNARAA TILPQFVGLK FQIHNGKEYV  60
   61 PIEISEDMVG HKLGEFAPTR KRFSYTQTKN K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.9897
Match:	1fjgS_
Description:	Ribosomal protein S19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: