Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNR029C.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..429] | [1..429] |
|
6.0E-95 | [69..428] | [3..373] |
|
9.0E-92 | [68..428] | [1..374] |
|
2.0E-91 | [68..428] | [3..370] |
|
2.0E-90 | [70..428] | [5..372] |
|
3.0E-90 | [67..428] | [31..405] |
|
5.0E-88 | [69..428] | [3..375] |
|
6.0E-87 | [68..428] | [1..375] |
|
6.0E-86 | [64..428] | [3..379] |
Region A: Residues: [1-65] |
1 11 21 31 41 51 | | | | | | 1 MSALRNIKFN EEEDGELPCL VTGEENNLQE ILENVSYDGG NIVSDAKVER VNKQVENTSA 60 61 GATDV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.511 | c.47.1 | Thioredoxin-like |
View | Download | 0.342 | b.84.2 | Rudiment single hybrid motif |
View | Download | 0.304 | a.60.2 | RuvA domain 2-like |
View | Download | 0.267 | a.55.1 | IHF-like DNA-binding proteins |
View | Download | 0.253 | a.60.2 | RuvA domain 2-like |
View | Download | 0.252 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.248 | a.4.1 | Homeodomain-like |
View | Download | 0.246 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
View | Download | 0.236 | a.101.1 | Uteroglobin-like |
View | Download | 0.232 | a.77.1 | DEATH domain |
View | Download | 0.231 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.225 | a.55.1 | IHF-like DNA-binding proteins |
View | Download | 0.223 | d.129.1 | TATA-box binding protein-like |
View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
Term | Confidence | Notes |
binding | 1.41264401383678 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
nucleic acid binding | 0.736973987187739 | bayes_pls_golite062009 |
RNA helicase activity | 0.39531421511441 | bayes_pls_golite062009 |
RNA-dependent ATPase activity | 0.249558209438385 | bayes_pls_golite062009 |
ATP-dependent RNA helicase activity | 0.231952192863482 | bayes_pls_golite062009 |
DNA binding | 0.156173690421144 | bayes_pls_golite062009 |
nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
Region A: Residues: [66-315] |
1 11 21 31 41 51 | | | | | | 1 HEKKRIPVSI ITGYLGSGKS TLLEKIALKG ADKKIAVILN EFGDSSEIEK AMTIKNGSNS 60 61 YQEWLDLGNG CLCCSLKNIG VKAIEDMVER SPGKIDYILL ETSGIADPAP IAKMFWQDEG 120 121 LNSSVYIDGI ITVLDCEHIL KCLDDISIDA HWHGDKVGLE GNLTIAHFQL AMADRIIMNK 180 181 YDTIEHSPEM VKQLKERVRE INSIAPMFFT KYSDTPIQNL LDIHAYDSVR ISDILDSGSG 240 241 NGTIHDDRMG |
Detection Method: | |
Confidence: | 2.09691 |
Match: | 2ffhA_ |
Description: | Signal sequence recognition protein Ffh; Signal sequence binding protein Ffh; GTPase domain of the signal sequence recognition protein Ffh |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [316-429] |
1 11 21 31 41 51 | | | | | | 1 TIMLTFRPLK NEEEYNNKFI KQFLQPLLWK NFGAMTVLGG RRRDDGRDWE VQRTKGLILI 60 61 EGENPIARVI QGVRDTYDVF PGKYDGSNKE CKIVLIGKYL EKESIEELLR KTLE |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.444 | 0.589 | cytoplasm | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.323 | 0.129 | cytoplasm | a.118.8 | TPR-like |
View | Download | 0.324 | 0.093 | cytoplasm | d.110.4 | SNARE-like |
View | Download | 0.336 | 0.000 | cytoplasm | a.81.1 | N-terminal domain of DnaB helicase |
View | Download | 0.336 | N/A | N/A | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
View | Download | 0.318 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.317 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
View | Download | 0.294 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
View | Download | 0.291 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.290 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.280 | N/A | N/A | c.95.1 | Thiolase-like |
View | Download | 0.270 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.267 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
View | Download | 0.266 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
View | Download | 0.243 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
View | Download | 0.241 | N/A | N/A | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
View | Download | 0.238 | N/A | N/A | d.94.2 | Putative transcriptional regulator TM1602, C-terminal domain |
View | Download | 0.234 | N/A | N/A | d.129.4 | Cell-division protein ZipA, C-terminal domain |
View | Download | 0.222 | N/A | N/A | d.68.6 | DNA-binding protein Sso10b (AlbA) |
View | Download | 0.220 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
View | Download | 0.210 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
View | Download | 0.201 | N/A | N/A | a.74.1 | Cyclin-like |