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View Structure Prediction Details

Protein: MRPS18
Organism: Saccharomyces cerevisiae
Length: 217 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS18.

Description E-value Query
Range
Subject
Range
RT18_YEAST - 37S ribosomal protein S18, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
MRPS18 - Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mit...
8.0E-69 [1..217] [1..217]
RS11_OCHA4 - 30S ribosomal protein S11 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rp...
RS11_BRUO2 - 30S ribosomal protein S11 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsK PE=3 SV...
RS11_BRUA2 - 30S ribosomal protein S11 OS=Brucella abortus (strain 2308) GN=rpsK PE=3 SV=1
RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsK PE=3 SV=1
RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus GN=rpsK PE=3 SV=1
gi|225627681, gi... - gi|225627681|ref|ZP_03785718.1| 30S ribosomal protein S11 [Brucella ceti str. Cudo], gi|225617686|gb...
gi|239824366, gi... - gi|239832099|ref|ZP_04680428.1| 30S ribosomal protein S11 [Ochrobactrum intermedium LMG 3301], gi|23...
gi|254689430 - gi|254689430|ref|ZP_05152684.1| 30S ribosomal protein S11 [Brucella abortus bv. 6 str. 870]
RS11_BRUMB - 30S ribosomal protein S11 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsK PE=3 SV=1
gi|237788927, gi... - gi|237815629|ref|ZP_04594626.1| 30S ribosomal protein S11 [Brucella abortus str. 2308 A], gi|2377889...
gi|254701951 - gi|254701951|ref|ZP_05163779.1| 30S ribosomal protein S11 [Brucella suis bv. 5 str. 513]
gi|254704495 - gi|254704495|ref|ZP_05166323.1| 30S ribosomal protein S11 [Brucella suis bv. 3 str. 686]
gi|254693915 - gi|254693915|ref|ZP_05155743.1| 30S ribosomal protein S11 [Brucella abortus bv. 3 str. Tulya]
gi|254697565 - gi|254697565|ref|ZP_05159393.1| 30S ribosomal protein S11 [Brucella abortus bv. 2 str. 86/8/59]
RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis GN=rpsK PE=3 SV=1
gi|254714278 - gi|254714278|ref|ZP_05176089.1| 30S ribosomal protein S11 [Brucella ceti M644/93/1]
gi|254717715 - gi|254717715|ref|ZP_05179526.1| 30S ribosomal protein S11 [Brucella ceti M13/05/1]
RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis biovar 1 (strain 1330) GN=rpsK PE=3 SV=1
gi|254706609 - gi|254706609|ref|ZP_05168437.1| 30S ribosomal protein S11 [Brucella pinnipedialis M163/99/10]
RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN...
gi|254710281 - gi|254710281|ref|ZP_05172092.1| 30S ribosomal protein S11 [Brucella pinnipedialis B2/94]
gi|254719268 - gi|254719268|ref|ZP_05181079.1| 30S ribosomal protein S11 [Brucella sp. 83/13]
RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis GN=rpsK PE=3 SV=1
RS11_BRUA1 - 30S ribosomal protein S11 OS=Brucella abortus (strain S19) GN=rpsK PE=3 SV=1
gi|254730459 - gi|254730459|ref|ZP_05189037.1| 30S ribosomal protein S11 [Brucella abortus bv. 4 str. 292]
RS11_BRUSI - 30S ribosomal protein S11 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsK PE=3 SV=1
RS11_BRUC2 - 30S ribosomal protein S11 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsK PE=3 SV=1
1.0E-42 [83..217] [2..129]
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1
RS11_CAUCN - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsK PE=3 SV=1
1.0E-42 [83..217] [2..129]
RS11_SINMW - 30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1
RS11_RHISN - 30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1
RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1
RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti (strain 1021) GN=rpsK PE=3 SV=1
6.0E-42 [83..217] [2..129]
RS11_PASMU - 30S ribosomal protein S11 OS=Pasteurella multocida GN=rpsK PE=3 SV=1
RS11_HISS2 - 30S ribosomal protein S11 OS=Histophilus somni (strain 2336) GN=rpsK PE=3 SV=1
RS11_PASMU - 30S ribosomal protein S11 OS=Pasteurella multocida (strain Pm70) GN=rpsK PE=3 SV=1
tr|J6CNC5|J6CNC5... - 30S ribosomal protein S11 OS=Pasteurella multocida subsp. multocida str. Anand1_cattle GN=rpsK PE=3 ...
gi|247535248, gi... - gi|251793849|ref|YP_003008581.1| ribosomal protein S11 [Aggregatibacter aphrophilus NJ8700], gi|2475...
6.0E-41 [83..217] [2..129]
gi|229369536, gi... - gi|229606881|ref|YP_002877529.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae MJ-1236], gi|229...
gi|229335129, gi... - gi|229527497|ref|ZP_04416889.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae 12129(1)], gi|229...
gi|229524554, gi... - gi|229524554|ref|ZP_04413959.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae bv. albensis VL42...
gi|229341233, gi... - gi|229521639|ref|ZP_04411057.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae TM 11079-80], gi|...
gi|229516826, gi... - gi|229516826|ref|ZP_04406272.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae RC9], gi|22934588...
gi|229349373, gi... - gi|229513496|ref|ZP_04402960.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae TMA 21], gi|22934...
RS11_VIBCB - 30S ribosomal protein S11 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpsK PE=3 SV=1
gi|229353175, gi... - gi|229509701|ref|ZP_04399182.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae B33], gi|22935317...
gi|197750417, gi... - gi|254292240|ref|ZP_04963003.1| ribosomal protein S11 [Vibrio cholerae AM-19226], gi|197750417|ref|Y...
gi|229507375, gi... - gi|229507375|ref|ZP_04396880.1| SSU ribosomal protein S11p (S14e) [Vibrio cholerae BX 330286], gi|22...
RS11_VIBCM - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsK PE=3 SV=1
gi|116187571, gi... - gi|75828520|ref|ZP_00757915.1| COG0100: Ribosomal protein S11 [Vibrio cholerae MO10], gi|254851113|r...
RS11_VIBC3 - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ...
RS11_VIBCH - 30S ribosomal protein S11 OS=Vibrio cholerae GN=rpsK PE=3 SV=1
RS11_VIBPA - 30S ribosomal protein S11 OS=Vibrio parahaemolyticus GN=rpsK PE=3 SV=1
RS11_VIBVU - 30S ribosomal protein S11 OS=Vibrio vulnificus GN=rpsK PE=3 SV=1
gi|149737817, gi... - gi|153827708|ref|ZP_01980375.1| ribosomal protein S11 [Vibrio cholerae MZO-2], gi|149737817|gb|EDM52...
gi|153840231, gi... - gi|153840231|ref|ZP_01992898.1| ribosomal protein S11 [Vibrio parahaemolyticus AQ3810], gi|149746108...
gi|254509450, gi... - gi|254509450|ref|ZP_05121528.1| ribosomal protein S11 [Vibrio parahaemolyticus 16], gi|225098212|ref...
gi|149192392, gi... - gi|149192392|ref|ZP_01870593.1| 30S ribosomal protein S11 [Vibrio shilonii AK1], gi|148833783|gb|EDL...
RS11_VIBVU - 30S ribosomal protein S11 OS=Vibrio vulnificus (strain CMCP6) GN=rpsK PE=3 SV=1
RS11_VIBVY - 30S ribosomal protein S11 OS=Vibrio vulnificus (strain YJ016) GN=rpsK PE=3 SV=1
RS11_VIBPA - 30S ribosomal protein S11 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpsK PE...
RS11_VIBCH - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G...
gi|124113314, gi... - gi|153217777|ref|ZP_01951420.1| ribosomal protein S11 [Vibrio cholerae 1587], gi|124113314|gb|EAY321...
1.0E-40 [83..217] [2..129]
gi|213999761 - gi|213999761|ref|ZP_03410496.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|213580696 - gi|213580696|ref|ZP_03362522.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
RS11_SALTI - 30S ribosomal protein S11 OS=Salmonella typhi GN=rpsK PE=3 SV=1
gi|213612394 - gi|213612394|ref|ZP_03370220.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|213647331 - gi|213647331|ref|ZP_03377384.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|213856916 - gi|213856916|ref|ZP_03384156.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
RS11_SALTI - 30S ribosomal protein S11 OS=Salmonella typhi GN=rpsK PE=3 SV=1
gi|29139991, gi|... - gi|29144353|ref|NP_807695.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serovar ...
gi|213052885 - gi|213052885|ref|ZP_03345763.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|213419636 - gi|213419636|ref|ZP_03352702.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|213425774 - gi|213425774|ref|ZP_03358524.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
gi|16762866 - gi|16762866|ref|NP_458483.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serovar ...
1.0E-40 [83..217] [2..129]
gi|87162098|ref|... - 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus USA300], 30S ribosomal protein S11 [S...
RS11_STAAC - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain COL) GN=rpsK PE=3 SV=1
RS11_STAHJ - 30S ribosomal protein S11 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsK PE=3 SV=1
RS11_STAA3 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300) GN=rpsK PE=3 SV=1
RS11_STAAB - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsK PE=3 SV=1
RS11_STAAT - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsK PE=3 SV=1
RS11_STAAW - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MW2) GN=rpsK PE=3 SV=1
RS11_STAA2 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH1) GN=rpsK PE=3 SV=1
RS11_STAA9 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH9) GN=rpsK PE=3 SV=1
gi|269203858|ref... - 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus ED98]
gi|221140173 - gi|221140173|ref|ZP_03564666.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ...
gi|221138927 - gi|221138927|ref|ZP_03563728.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ...
gi|227246802, gi... - gi|227556944|ref|ZP_03986991.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus MN8],...
RS11_STAA1 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsK PE=3 SV=1
gi|222444269, gi... - gi|223042606|ref|ZP_03612655.1| 30S ribosomal protein S11 [Staphylococcus capitis SK14], gi|22244426...
gi|227852757, gi... - gi|227899004|ref|ZP_04016809.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH60...
RS11_STAAE - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Newman) GN=rpsK PE=3 SV=1
gi|228474577, gi... - gi|228474577|ref|ZP_04059308.1| 30S ribosomal protein S11 [Staphylococcus hominis SK119], gi|2282712...
gi|242350379, gi... - gi|242371872|ref|ZP_04817446.1| 30S ribosomal protein S11 [Staphylococcus epidermidis M23864:W1], gi...
gi|251813348, gi... - gi|251813348|ref|ZP_04827821.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH70...
gi|253316986 - gi|253316986|ref|ZP_04840199.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ...
gi|253729891, gi... - gi|253729891|ref|ZP_04864056.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus USA30...
gi|253727683, gi... - gi|253734366|ref|ZP_04868531.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH13...
gi|255007005 - gi|255007005|ref|ZP_05145606.2| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus Mu50-...
RS11_STAAM - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsK PE=3 SV=1
RS11_STAAN - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain N315) GN=rpsK PE=1 SV=1
RS11_STAA8 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsK PE=3 SV=1
RS11_STAAS - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MSSA476) GN=rpsK PE=3 SV=1
gi|25294668 - pir||D90019 30S ribosomal protein S11 [imported] - Staphylococcus aureus (strain N315)
RS11_STAAR - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MRSA252) GN=rpsK PE=3 SV=1
2.0E-40 [83..217] [2..129]
RS11_SALPB - 30S ribosomal protein S11 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsK PE=3 SV=1
RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis GN=rpsK PE=3 SV=1
RS11_SALPB - 30S ribosomal protein S11 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsK PE=3 SV=1
lcl|NC_016856.1_... - [gene=rpsK] [protein=30S ribosomal protein S11] [protein_id=YP_005239607.1] [location=complement(359...
gi|168264702, gi... - gi|205346874|gb|EDZ33505.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar Hadar...
RS11_SALPA - 30S ribosomal protein S11 OS=Salmonella paratyphi A GN=rpsK PE=3 SV=1
RS11_SALPA - 30S ribosomal protein S11 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rpsK PE=3 SV=1
gi|238913868 - gi|238913868|ref|ZP_04657705.1| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov...
RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis (strain SC-B67) GN=rpsK PE=3 SV=1
gi|199605958, gi... - gi|200388860|ref|ZP_03215472.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar V...
gi|204931410, gi... - gi|204931410|ref|ZP_03222079.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar J...
RS11_SALG2 - 30S ribosomal protein S11 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rpsK PE=3 SV=1
RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium GN=rpsK PE=3 SV=2
RS11_SALPC - 30S ribosomal protein S11 OS=Salmonella paratyphi C (strain RKS4594) GN=rpsK PE=3 SV=1
RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis GN=rpsK PE=3 SV=1
RS11_SALSV - 30S ribosomal protein S11 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsK PE=3 SV=1
RS11_SALA4 - 30S ribosomal protein S11 OS=Salmonella agona (strain SL483) GN=rpsK PE=3 SV=1
gi|197261685, gi... - gi|197261685|ref|ZP_03161759.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar S...
RS11_SALDC - 30S ribosomal protein S11 OS=Salmonella dublin (strain CT_02021853) GN=rpsK PE=3 SV=1
RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rpsK PE...
gi|195628907, gi... - gi|195628907|gb|EDX48317.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar Newpo...
RS11_SALNS - 30S ribosomal protein S11 OS=Salmonella newport (strain SL254) GN=rpsK PE=3 SV=1
RS11_SALHS - 30S ribosomal protein S11 OS=Salmonella heidelberg (strain SL476) GN=rpsK PE=3 SV=1
gi|194472213, gi... - gi|194472213|ref|ZP_03078197.1| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar K...
RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium GN=rpsK PE=3 SV=2
2.0E-40 [83..217] [2..129]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQPVWKGC RWTQFVRPIR RWNSTGTNRG VPFSFKDISN QEDITNISYP SSSDSVLTKS  60
   61 NGSSEVYKPK EEVVKYILHG KFTKNNTHLT FSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.610 d.93.1 SH2 domain
View Download 0.610 d.93.1 SH2 domain
View Download 0.595 d.93.1 SH2 domain
View Download 0.551 d.93.1 SH2 domain
View Download 0.460 d.93.1 SH2 domain
View Download 0.414 d.93.1 SH2 domain
View Download 0.386 d.1.1 Microbial ribonucleases
View Download 0.300 d.129.1 TATA-box binding protein-like
View Download 0.258 d.129.1 TATA-box binding protein-like
View Download 0.227 a.4.1 Homeodomain-like
View Download 0.224 b.43.4 Riboflavin synthase domain-like
View Download 0.222 d.39.1 Dynein light chain 8 (DLC8)
View Download 0.205 d.74.2 C-terminal domain of arginine repressor

Predicted Domain #2
Region A:
Residues: [94-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVEDKNFHKN KGLTYNDTML YYLNLPQKVK ISLSTGCLGF RKAARGEYEA AFQTSGRMFE  60
   61 LIKEKNMLNK DIEVVMDDFG KGRAAFISAL VGKEGASVVK KVVKISDATK LKFGGVRSPK 120
  121 MRRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.39794
Match: 1l1uK_
Description: No description for 1l1uK_ was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.83351366956976 bayes_pls_golite062009
structural molecule activity 9.25292687983044 bayes_pls_golite062009
RNA binding 1.52264031918826 bayes_pls_golite062009
binding 1.00308223323532 bayes_pls_golite062009
nucleic acid binding 0.983215686081669 bayes_pls_golite062009
protein binding 0.452073733364249 bayes_pls_golite062009
rRNA binding 0.357032493028 bayes_pls_golite062009
catalytic activity 0.249767694451989 bayes_pls_golite062009
translation regulator activity 0.17520676474539 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle