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View Structure Prediction Details

Protein: NSG2
Organism: Saccharomyces cerevisiae
Length: 299 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSG2.

Description E-value Query
Range
Subject
Range
NSG2_YEAST - Protein NSG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSG2 PE=1 SV=1
NSG2 - Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG...
0.0 [1..299] [1..299]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRGEPDPK KSTESICSLT KPQLYSLYDD DVVRSEDNEI YEELKRSVSI DSTKYSRDQT  60
   61 IDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFYLAHKVGG SLPRNTVSSN NLERILSASS IHENFPSRTR QTRQNILHYL QAVLILSLSG  60
   61 FAYHELSRNL HDNHLLHPDF ASRPLLLGVK LCNWLSNGVL PNWLGYGVEG LLFGSVVPIL 120
  121 DNIFQTEVVK SSVHHDSLTS VIRSINAMLG VTFGIRKIQW NSSLQAAGAW GLLNIILWLF 180
  181 FDGSISMLMS CICIGVGCCI SCYKDIIDGS QFLYFMDFYF LGSLMFGKLG RYLYSH

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.18
Match: 1jfaA
Description: Trichodiene synthase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle