| Protein: | SPC98 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 846 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPC98.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..846] | [1..846] |
|
|
0.0 | [24..845] | [30..812] |
|
|
0.0 | [88..799] | [131..869] |
|
|
0.0 | [42..719] | [55..772] |
|
|
0.0 | [42..720] | [55..773] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MELEPTLFGI IEALAPQLLS QSHLQTFVSD VVNLLRSSTK SATQLGPLID FYKLQSLDSP 60
61 ETTIMWHKIE KFLDALFGIQ NTDDMVKYLS VFQSLLPSNY RAKIVQKSSG LNMENLANHE 120
121 HLLSPVRAPS IYTEASFENM DRFSERRSMV SSPNRYVP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [159-707] |
1 11 21 31 41 51
| | | | | |
1 SSTYSSVTLR QLSNPYYVNT IPEEDILKYV SYTLLATTSA LFPFDHEQIQ IPSKIPNFES 60
61 GLLHLIFEAG LLYQSLGYKV EKFRMLNISP MKKALIIEIS EELQNYTAFV NNLVSSGTVV 120
121 SLKSLYREIY ENIIRLRIYC RFTEHLEELS GDTFLIELNI FKSHGDLTIR KIATNLFNSM 180
181 ISLYYEYLMN WLTKGLLRAT YGEFFIAENT DTNGTDDDFI YHIPIEFNQE RVPAFIPKEL 240
241 AYKIFMIGKS YIFLEKYCKE VQWTNEFSKK YHVLYQSNSY RGISTNFFEI INDQYSEIVN 300
301 HTNQILNQKF HYRDVVFALK NILLMGKSDF MDALIEKAND ILATPSDSLP NYKLTRVLQE 360
361 AVQLSSLRHL MNSPRNSSVI NGLDARVLDL GHGSVGWDVF TLDYILYPPL SLVLNVNRPF 420
421 GRKEYLRIFN FLWRFKKNNY FYQKEMLKSN DIIRSFKKIR GYNPLIRDII NKLSRISILR 480
481 TQFQQFNSKM ESYYLNCIIE ENFKEMTRKL QRTENKSQNQ FDLIRLNNGT IELNGILTPK 540
541 AEVLTKSSS
|
| Detection Method: | |
| Confidence: | 7.19 |
| Match: | 1b89A |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.57708254106901 | bayes_pls_golite062009 |
| binding | 2.38363524631144 | bayes_pls_golite062009 |
| protein binding | 1.81870125631028 | bayes_pls_golite062009 |
| actin binding | 1.74253257307802 | bayes_pls_golite062009 |
|
Region A: Residues: [708-846] |
1 11 21 31 41 51
| | | | | |
1 SKPQKHAIEK TLNIDELESV HNTFLTNILS HKLFATNTSE ISVGDYSGQP YPTSLVLLLN 60
61 SVYEFVKVYC NLNDIGYEIF IKMNLNDHEA SNGLLGKFNT NLKEIVSQYK NFKDRLYIFR 120
121 ADLKNDGDEE LFLLSKSLR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.710 | c.1.15 | Xylose isomerase-like |
| View | Download | 0.614 | d.79.1 | YjgF-like |
| View | Download | 0.610 | c.16.1 | Lumazine synthase |
| View | Download | 0.652 | c.49.2 | ATP synthase (F1-ATPase), gamma subunit |
| View | Download | 0.685 | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.710 | c.1.15 | Xylose isomerase-like |
| View | Download | 0.685 | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.652 | c.49.2 | ATP synthase (F1-ATPase), gamma subunit |
| View | Download | 0.614 | d.79.1 | YjgF-like |
| View | Download | 0.610 | c.16.1 | Lumazine synthase |
| View | Download | 0.557 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.528 | d.58.29 | Adenylyl and guanylyl cyclase catalytic domain |
| View | Download | 0.520 | c.16.1 | Lumazine synthase |
| View | Download | 0.501 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.496 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.492 | a.24.3 | Cytochromes |
| View | Download | 0.490 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.473 | a.25.1 | Ferritin-like |
| View | Download | 0.467 | a.25.1 | Ferritin-like |
| View | Download | 0.462 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.460 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.430 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.427 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.424 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.418 | c.66.1 | S-adenosyl-L-methionine-dependent methyltransferases |
| View | Download | 0.414 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.410 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.409 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.404 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.404 | a.1.1 | Globin-like |
| View | Download | 0.403 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.403 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.401 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.398 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.396 | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.384 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.360 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.358 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.356 | c.61.1 | PRTase-like |
| View | Download | 0.355 | d.13.1 | HIT-like |
| View | Download | 0.354 | d.58.29 | Adenylyl and guanylyl cyclase catalytic domain |
| View | Download | 0.353 | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
| View | Download | 0.333 | c.1.8 | (Trans)glycosidases |
| View | Download | 0.332 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.332 | a.26.1 | 4-helical cytokines |
| View | Download | 0.329 | a.3.1 | Cytochrome c |
| View | Download | 0.325 | c.23.5 | Flavoproteins |
| View | Download | 0.312 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.304 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.299 | c.50.1 | Macro domain-like |
| View | Download | 0.298 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.296 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.295 | c.17.1 | Caspase-like |
| View | Download | 0.285 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.282 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.282 | c.23.5 | Flavoproteins |
| View | Download | 0.278 | d.79.4 | Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain |
| View | Download | 0.277 | a.39.1 | EF-hand |
| View | Download | 0.273 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.271 | a.1.1 | Globin-like |
| View | Download | 0.264 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.264 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.263 | d.79.1 | YjgF-like |
| View | Download | 0.261 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.253 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.252 | c.23.10 | SGHN hydrolase |
| View | Download | 0.247 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.241 | a.7.7 | BAG domain |
| View | Download | 0.238 | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.231 | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.230 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.227 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.226 | a.47.2 | t-snare proteins |
| View | Download | 0.225 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.225 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.225 | a.25.1 | Ferritin-like |
| View | Download | 0.215 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.213 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.208 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.202 | a.28.1 | ACP-like |
| View | Download | 0.201 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| Term | Confidence | Notes |
| binding | 1.31927971777231 | bayes_pls_golite062009 |
| protein binding | 0.614639185145051 | bayes_pls_golite062009 |
| catalytic activity | 0.370165934559297 | bayes_pls_golite062009 |
