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View Structure Prediction Details

Protein: NOP15
Organism: Saccharomyces cerevisiae
Length: 220 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP15.

Description E-value Query
Range		 Subject
Range
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
 5.0E-73 [9..218] [98..321]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1
 5.0E-73 [9..218] [98..321]
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
gi|109087089 - gi|109087089|ref|XP_001098239.1| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca...
gi|123993665, gi... - gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct], gi|123999981|gb|...
gi|194036975 - gi|194036975|ref|XP_001927782.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind...
PABPC1 - poly(A) binding protein, cytoplasmic 1
gi|73974130, gi|... - gi|73974178|ref|XP_857695.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
 6.0E-73 [9..218] [98..321]
gi|13540314 - gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
 7.0E-71 [9..218] [98..321]
gi|2665654 - gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
 4.0E-70 [9..218] [98..322]
gi|19347816 - gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
 1.0E-69 [10..218] [108..329]
gi|19526272 - gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
 2.0E-69 [9..218] [98..321]

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Predicted Domain #1
Region A:
Residues: [1-86] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSTSKTST KETVTKQPTE EKPIQEKEEL ALETSSSSSD EEDEKDEDEI EGLAASDDEQ  60
   61 SGTHKIKRLN PKKQANEKKS KDKKTL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.751666
Match: 1fxlA_
Description: Hu antigen D (Hud)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 5.30964910634891 bayes_pls_golite062009
binding 3.49612884560266 bayes_pls_golite062009
2.46776845687856 bayes_pls_golite062009
nucleic acid binding 2.34356093608328 bayes_pls_golite062009
structural molecule activity 2.3267948877508 bayes_pls_golite062009
mRNA binding 2.24051526954235 bayes_pls_golite062009
protein binding 1.32954276279597 bayes_pls_golite062009
cytoskeletal protein binding 1.12523515831597 bayes_pls_golite062009
ribosomal large subunit binding 0.13509933485234 bayes_pls_golite062009
snoRNA binding 0.0568636182001701 bayes_pls_golite062009
single-stranded RNA binding 0.0260497600770142 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [87-220] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEYSGIIYVS RLPHGFHEKE LSKYFAQFGD LKEVRLARNK KTGNSRHYGF LEFVNKEDAM  60
   61 IAQESMNNYL LMGHLLQVRV LPKGAKIEKL YKYKKRVLVE KGITKPVKQL KDNMKQKHEE 120
  121 RIKKLAKSGI EFKW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.751666
Match: 1fxlA_
Description: Hu antigen D (Hud)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle