| Protein: | PUB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 453 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [66..453] | [2..420] |
|
|
0.0 | [66..452] | [2..417] |
|
|
0.0 | [66..452] | [2..417] |
|
|
0.0 | [66..452] | [2..417] |
|
|
0.0 | [66..453] | [2..417] |
|
|
0.0 | [71..452] | [7..416] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MSENNEEQHQ QQQQQQPVAV ETPSAVEAPA SADPSSEQSV AVEGNSEQAE DNQGENDPSV 60
61 VPANAITGGR ETSDRVLYVG NLDKAITEDI LKQYFQVGGP IANIKIMIDK NNKNVNYAFV 120
121 EYHQSHDANI ALQTLNGKQI ENNIVKINWA FQ
|
| Detection Method: |  |
| Confidence: | 261.211549 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| 4.08350076268185 | bayes_pls_golite062009 | |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.47215943693079 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| snRNA binding | 1.12690941758278 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [153-275] |
1 11 21 31 41 51
| | | | | |
1 SQQSSSDDTF NLFVGDLNVN VDDETLRNAF KDFPSYLSGH VMWDMQTGSS RGYGFVSFTS 60
61 QDDAQNAMDS MQGQDLNGRP LRINWAAKRD NNNNNNYQQR RNYGNNNRGG FRQYNSNNNN 120
121 NMN
|
| Detection Method: | |
| Confidence: | 261.211549 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [276-331] |
1 11 21 31 41 51
| | | | | |
1 MGMNMNMNMN MNNSRGMPPS SMGMPIGAMP LPSQGQPQQS QTIGLPPQVN PQAVDH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [332-453] |
1 11 21 31 41 51
| | | | | |
1 IIRSAPPRVT TAYIGNIPHF ATEADLIPLF QNFGFILDFK HYPEKGCCFI KYDTHEQAAV 60
61 CIVALANFPF QGRNLRTGWG KERSNFMPQQ QQQGGQPLIM NDQQQPVMSE QQQQQQQQQQ 120
121 QQ
|
| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1bnyA_ |
| Description: | No description for 1bnyA_ was found. |
