YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR321C
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR321C.

Description	E-value	Query Range	Subject Range
YM99_YEAST - Putative uncharacterized protein YMR321C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... YMR321C - Putative protein of unknown function; proposed to be a palmitoylated membrane protein	2.0E-34	[1..105]	[1..105]
CE01609 - 5-methyltetrahydrofolate-homocysteine methyltransferase status:Partially_confirmed UniProt:Q09582 pr...	4.0E-28	[11..105]	[241..331]
gi\|159185077, gi... - gi\|17936039\|ref\|NP_532829.1\| methionine synthase [Agrobacterium tumefaciens str. C58], gi\|17740620\|g... gi\|25285955 - pir\|\|AC2841 methionine synthase metH [imported] - Agrobacterium tumefaciens (strain C58, Dupont)	4.0E-28	[11..104]	[252..341]
HMT3_ARATH - Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2	7.0E-28	[10..103]	[242..335]
SMTA_ASTBI - Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1	2.0E-27	[10..101]	[236..327]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDLGDKINP NLSFLGINCV SFNQSPDILE SLHQALPNMA LLAYPNSGEV YDTEKKIWLP  60
   61 NSDKLNSWDT VVKQYISSGA RIIGGCCRTS PKDIQEISAA VKKYT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.829	c.30.1	PreATP-grasp domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits