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View Structure Prediction Details

Protein: YMR321C
Organism: Saccharomyces cerevisiae
Length: 105 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR321C.

Description E-value Query
Range
Subject
Range
YM99_YEAST - Putative uncharacterized protein YMR321C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
YMR321C - Putative protein of unknown function; proposed to be a palmitoylated membrane protein
2.0E-34 [1..105] [1..105]
CE01609 - 5-methyltetrahydrofolate-homocysteine methyltransferase status:Partially_confirmed UniProt:Q09582 pr...
4.0E-28 [11..105] [241..331]
gi|159185077, gi... - gi|17936039|ref|NP_532829.1| methionine synthase [Agrobacterium tumefaciens str. C58], gi|17740620|g...
gi|25285955 - pir||AC2841 methionine synthase metH [imported] - Agrobacterium tumefaciens (strain C58, Dupont)
4.0E-28 [11..104] [252..341]
HMT3_ARATH - Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2
7.0E-28 [10..103] [242..335]
SMTA_ASTBI - Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1
2.0E-27 [10..101] [236..327]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDLGDKINP NLSFLGINCV SFNQSPDILE SLHQALPNMA LLAYPNSGEV YDTEKKIWLP  60
   61 NSDKLNSWDT VVKQYISSGA RIIGGCCRTS PKDIQEISAA VKKYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.829 c.30.1 PreATP-grasp domain
View Download 0.814 c.57.1 Molybdenum cofactor biosynthesis proteins
View Download 0.742 c.30.1 PreATP-grasp domain
View Download 0.698 c.23.1 CheY-like
View Download 0.682 c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.682 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.676 c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.673 c.3.1 FAD/NAD(P)-binding domain
View Download 0.669 c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.636 d.187.1 Photosystem I subunit PsaD
View Download 0.633 c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.564 c.10.2 L domain-like
View Download 0.559 c.23.1 CheY-like
View Download 0.557 c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View Download 0.537 c.23.1 CheY-like
View Download 0.519 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.518 c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.516 c.5.1 MurCD N-terminal domain
View Download 0.494 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.487 c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.486 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.470 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.466 c.23.1 CheY-like
View Download 0.459 c.23.1 CheY-like
View Download 0.457 c.1.2 Ribulose-phoshate binding barrel
View Download 0.456 d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like
View Download 0.455 c.15.1 BRCT domain
View Download 0.450 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.439 c.10.1 RNI-like
View Download 0.426 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.423 c.1.10 Aldolase
View Download 0.418 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.409 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.404 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.404 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.401 c.24.1 Methylglyoxal synthase-like
View Download 0.393 c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.390 c.48.1 TK C-terminal domain-like
View Download 0.383 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.374 c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.367 c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
View Download 0.358 c.103.1 Hypothetical protein MT938 (MTH938)
View Download 0.357 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.353 c.23.13 Type II 3-dehydroquinate dehydratase
View Download 0.351 c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.351 c.114.1 YchN-like
View Download 0.351 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.344 c.102.1 Cell-division inhibitor MinC, N-terminal domain
View Download 0.340 c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
View Download 0.340 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.335 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.333 c.52.1 Restriction endonuclease-like
View Download 0.329 c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.328 c.26.1 Nucleotidylyl transferase
View Download 0.323 g.10.1 Hairpin loop containing domain-like
View Download 0.319 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.318 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.312 c.23.13 Type II 3-dehydroquinate dehydratase
View Download 0.307 c.23.5 Flavoproteins
View Download 0.301 c.5.1 MurCD N-terminal domain
View Download 0.300 c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.299 c.78.2 Aspartate/glutamate racemase
View Download 0.299 c.36.1 Thiamin diphosphate-binding fold (THDP-binding)
View Download 0.299 c.45.1 (Phosphotyrosine protein) phosphatases II
View Download 0.298 c.10.1 RNI-like
View Download 0.292 c.98.2 HPr kinase/phoshatase HprK N-terminal domain
View Download 0.291 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.290 c.121.1 Ribose/Galactose isomerase RpiB/AlsB
View Download 0.288 c.95.1 Thiolase-like
View Download 0.287 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.280 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.277 c.23.16 Class I glutamine amidotransferase-like
View Download 0.276 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.276 c.1.11 Enolase C-terminal domain-like
View Download 0.275 c.44.2 Enzyme IIB-cellobiose
View Download 0.271 c.1.23 FAD-linked oxidoreductase
View Download 0.262 c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.257 c.78.2 Aspartate/glutamate racemase
View Download 0.256 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.256 c.26.3 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
View Download 0.255 c.52.1 Restriction endonuclease-like
View Download 0.255 c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.251 c.10.2 L domain-like
View Download 0.250 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.249 c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.247 c.3.1 FAD/NAD(P)-binding domain
View Download 0.247 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.246 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.245 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.243 c.47.1 Thioredoxin-like
View Download 0.242 d.169.1 C-type lectin-like
View Download 0.239 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.235 d.68.3 SirA-like
View Download 0.235 d.93.1 SH2 domain
View Download 0.232 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.232 c.23.8 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
View Download 0.230 c.55.4 Translational machinery components
View Download 0.225 c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.221 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.217 d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.214 d.74.4 Prokaryotic AspRS, insert domain
View Download 0.213 d.68.4 YhbY-like
View Download 0.207 c.61.1 PRTase-like
View Download 0.205 d.93.1 SH2 domain
View Download 0.204 c.61.1 PRTase-like
View Download 0.204 c.47.1 Thioredoxin-like
View Download 0.200 a.118.8 TPR-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle