Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSH155.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [72..971] | [387..1304] |
|
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0.0 | [1..971] | [1..971] |
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0.0 | [72..971] | [390..1307] |
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0.0 | [70..971] | [392..1322] |
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0.0 | [72..971] | [350..1267] |
|
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0.0 | [22..960] | [270..1192] |
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0.0 | [22..960] | [253..1175] |
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0.0 | [119..971] | [531..1386] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MSHPIQFVNA NNSDKSHQLG GQYSIPQDLR ENLQKEAARI GENEKDVLQE KMETRTVQNR 60
61 EDSYHKRRFD M
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [72-173] |
1 11 21 31 41 51
| | | | | |
1 KFEPDSDTQT VTSSENTQDA VVPRKRKSRW DVKGYEPPDE SSTAVKENSD SALVNVEGIH 60
61 DLMFFKPSDH KYFADVISKK PIDELNKDEK KERTLSMLLL KI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [174-253] |
1 11 21 31 41 51
| | | | | |
1 KNGNTASRRT SMRILTDKAV TFGPEMIFNR LLPILLDRSL EDQERHLMIK TIDRVLYQLG 60
61 DLTKPYVHKI LVVAAPLLID
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.964 | 0.054 | U2 snRNP | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [254-363] |
1 11 21 31 41 51
| | | | | |
1 EDPMVRSTGQ EIITNLSTVA GLKTILTVMR PDIENEDEYV RNVTSRAAAV VAKALGVNQL 60
61 LPFINAACHS RKSWKARHTG IKIVQQIGIL LGIGVLNHLT GLMSCIKDCL
|
| Detection Method: | |
| Confidence: | 82.39794 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| binding | 2.91891696274037 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| protein binding | 1.75981610748679 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| RNA cap binding | 0.66277586901495 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| signal sequence binding | 0.289133192719901 | bayes_pls_golite062009 |
|
Region A: Residues: [364-747] |
1 11 21 31 41 51
| | | | | |
1 MDDHVPVRIV TAHTLSTLAE NSYPYGIEVF NVVLEPLWKG IRSHRGKVLS SFLKAVGSMI 60
61 PLMDPEYAGY YTTEAMRIIR REFDSPDDEM KKTILLVLQK CSAVESITPK FLREEIAPEF 120
121 FQKFWVRRVA LDRPLNKVVT YTTVTLAKKL GCSYTIDKLL TPLRDEAEPF RTMAVHAVTR 180
181 TVNLLGTADL DERLETRLID ALLIAFQEQT NSDSIIFKGF GAVTVSLDIR MKPFLAPIVS 240
241 TILNHLKHKT PLVRQHAADL CAILIPVIKN CHEFEMLNKL NIILYESLGE VYPEVLGSII 300
301 NAMYCITSVM DLDKLQPPIN QILPTLTPIL RNKHRKVEVN TIKFVGLIGK LAPTYAPPKE 360
361 WMRICFELLE LLKSTNKEIR RSAN
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1qgkA_ |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [748-971] |
1 11 21 31 41 51
| | | | | |
1 ATFGFIAEAI GPHDVLVALL NNLKVQERQL RVCTAVAIGI VAKVCGPYNV LPVIMNEYTT 60
61 PETNVQNGVL KAMSFMFEYI GNMSKDYIYF ITPLLEDALT DRDLVHRQTA SNVITHLALN 120
121 CSGTGHEDAF IHLMNLLIPN IFETSPHAIM RILEGLEALS QALGPGLFMN YIWAGLFHPA 180
181 KNVRKAFWRV YNNMYVMYQD AMVPFYPVTP DNNEEYIEEL DLVL
|
| Detection Method: | |
| Confidence: | 55.0 |
| Match: | 1qgkA_ |
| Description: | Importin beta |
| Matching Structure (courtesy of the PDB): |
|
