| Protein: | GAD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 585 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..585] | [1..585] |
|
|
0.0 | [31..559] | [1..486] |
|
|
0.0 | [31..562] | [1..482] |
|
|
0.0 | [7..551] | [1..504] |
|
|
0.0 | [7..529] | [1..473] |
|
|
0.0 | [48..570] | [22..496] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MLHRHGSKQK NFENIAGKVV HDLAGLQLLS NDVQKSAVQS GHQGSNNMRD TSSQGMANKY 60
61 SVPKKGLPAD LSYQLIHNEL TLDGN
|
| Detection Method: |  |
| Confidence: | 107.0 |
| Match: | 1js3A_ |
| Description: | DOPA decarboxylase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 2.29878871754893 | bayes_pls_golite062009 |
| transferase activity | 1.44093490824786 | bayes_pls_golite062009 |
| glutamate decarboxylase activity | 1.34215658716536 | bayes_pls_golite062009 |
| transferase activity, transferring nitrogenous groups | 1.28316822767388 | bayes_pls_golite062009 |
| transaminase activity | 1.24990480711889 | bayes_pls_golite062009 |
| glycine dehydrogenase (decarboxylating) activity | 1.05524734914785 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | 1.05524734914785 | bayes_pls_golite062009 |
| binding | 0.252160165096264 | bayes_pls_golite062009 |
| N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | 0.223759435414525 | bayes_pls_golite062009 |
| pyridoxal phosphate binding | 0.16957228630576 | bayes_pls_golite062009 |
| vitamin B6 binding | 0.16957228630576 | bayes_pls_golite062009 |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.13686553668007 | bayes_pls_golite062009 |
|
Region A: Residues: [86-585] |
1 11 21 31 41 51
| | | | | |
1 PHLNLASFVN TFTTDQARKL IDENLTKNLA DNDEYPQLIE LTQRCISMLA QLWHANPDEE 60
61 PIGCATTGSS EAIMLGGLAM KKRWEHRMKN AGKDASKPNI IMSSACQVAL EKFTRYFEVE 120
121 CRLVPVSHRS HHMLDPESLW DYVDENTIGC FVILGTTYTG HLENVEKVAD VLSQIEAKHP 180
181 DWSNTDIPIH ADGASGGFII PFGFEKEHMK AYGMERWGFN HPRVVSMNTS GHKFGLTTPG 240
241 LGWVLWRDES LLADELRFKL KYLGGVEETF GLNFSRPGFQ VVHQYFNFVS LGHSGYRTQF 300
301 QNSLFVARAF SFELLNSSKL PGCFEIVSSI HESIENDSAP KSVKDYWEHP QAYKPGVPLV 360
361 AFKLSKKFHE EYPEVPQAIL SSLLRGRGWI IPNYPLPKAT DGSDEKEVLR VVFRSEMKLD 420
421 LAQLLIVDIE SILTKLIHSY EKVCHHIELA SEQTPERKSS FIYEMLLALA SPQDDIPTPD 480
481 EIEKKNKLKE TTTRNYRGTC
|
| Detection Method: | |
| Confidence: | 107.0 |
| Match: | 1js3A_ |
| Description: | DOPA decarboxylase |
| Matching Structure (courtesy of the PDB): |
|
