YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR244C-A
Organism:	Saccharomyces cerevisiae
Length:	104 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR244C-A.

Description	E-value	Query Range	Subject Range
YMR244C-A - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to bo... COA6_YEAST - Cytochrome c oxidase assembly factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=C...	8.0E-32	[1..104]	[1..104]
gi\|17380356, gi\|... - gi\|6691806\|emb\|CAB65851.1\| EG:BACR37P7.3 [Drosophila melanogaster], gi\|17380356\|sp\|P39205\|CIN_DROME ...	9.0E-25	[19..91]	[6..76]
gi\|26452952, gi\|... - gi\|79331263\|ref\|NP_001032092.1\| unknown protein [Arabidopsis thaliana], gi\|26452952\|dbj\|BAC43552.1\| ...	6.0E-20	[22..101]	[23..99]
gi\|19343962 - gi\|19343962\|gb\|AAH25793.1\| C1orf31 protein [Homo sapiens]	5.0E-16	[21..89]	[35..92]
gi\|12007315 - gi\|12007315\|gb\|AAG45131.1\|AF310893_3 unknown [Dictyostelium discoideum]	5.0E-13	[9..92]	[35..104]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFSFDGGK KESQPPNTRS QRKLCWESRD AFFQCLDKAD ILDAMDPKNS KSIKSHCKVE  60
   61 NEKFEENCAH SWIKYFKEKR VIDFKREQTI KRIEQEAKQR ERNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits