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View Structure Prediction Details

Protein: YMR244C-A
Organism: Saccharomyces cerevisiae
Length: 104 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR244C-A.

Description E-value Query
Range
Subject
Range
YMR244C-A - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to bo...
COA6_YEAST - Cytochrome c oxidase assembly factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=C...
8.0E-32 [1..104] [1..104]
gi|17380356, gi|... - gi|6691806|emb|CAB65851.1| EG:BACR37P7.3 [Drosophila melanogaster], gi|17380356|sp|P39205|CIN_DROME ...
9.0E-25 [19..91] [6..76]
gi|26452952, gi|... - gi|79331263|ref|NP_001032092.1| unknown protein [Arabidopsis thaliana], gi|26452952|dbj|BAC43552.1| ...
6.0E-20 [22..101] [23..99]
gi|19343962 - gi|19343962|gb|AAH25793.1| C1orf31 protein [Homo sapiens]
5.0E-16 [21..89] [35..92]
gi|12007315 - gi|12007315|gb|AAG45131.1|AF310893_3 unknown [Dictyostelium discoideum]
5.0E-13 [9..92] [35..104]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFSFDGGK KESQPPNTRS QRKLCWESRD AFFQCLDKAD ILDAMDPKNS KSIKSHCKVE  60
   61 NEKFEENCAH SWIKYFKEKR VIDFKREQTI KRIEQEAKQR ERNQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.405 a.1.1 Globin-like
View Download 0.350 a.60.10 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View Download 0.302 a.66.1 Transducin (alpha subunit), insertion domain
View Download 0.341 a.142.1 PTS-regulatory domain, PRD
View Download 0.289 a.70.1 N-terminal domain of the delta subunit of the F1F0-ATP synthase
View Download 0.287 a.1.1 Globin-like
View Download 0.286 a.3.1 Cytochrome c
View Download 0.270 a.24.17 Group V grass pollen allergen
View Download 0.253 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.240 a.3.1 Cytochrome c
View Download 0.236 d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.234 d.185.1 LuxS/MPP-like metallohydrolase
View Download 0.227 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.221 a.118.1 ARM repeat
View Download 0.219 c.3.1 FAD/NAD(P)-binding domain
View Download 0.215 c.52.1 Restriction endonuclease-like
View Download 0.212 a.5.3 N-terminal domain of phosphatidylinositol transfer protein sec14p
View Download 0.206 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle