| Protein: | RNA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 407 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNA1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-62 | [1..406] | [68..472] |
|
|
2.0E-58 | [4..405] | [416..793] |
|
|
2.0E-58 | [1..406] | [78..482] |
|
|
5.0E-57 | [1..404] | [155..583] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MATLHFVPQH EEEQVYSISG KALKLTTSDD IKPYLEELAA LKTCTKLDLS GNTIGTEASE 60
61 ALAKCIAENT QVRESLVEVN FADLYTSRLV DEVVDSLKFL LPVLLKCPHL EIVNLSDNAF 120
121 GLRTIELLED YIAHAVNIKH LILSNNGMGP FAGERIGKAL FHLAQNKKAA SKPFLETFIC 180
181 GRNRLENGSA VYLAL
|
| Detection Method: |  |
| Confidence: | 609.228787 |
| Match: | 1k5dC_ |
| Description: | Rna1p (RanGAP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.665591019824 | bayes_pls_golite062009 |
| Ran GTPase activator activity | 2.34047639993996 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.29984527283876 | bayes_pls_golite062009 |
| protein binding | 1.61093336454573 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.2949624636683 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.28868732384901 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.2181060000102 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.20424046001063 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.08702516953191 | bayes_pls_golite062009 |
| ligase activity | 1.06832436797027 | bayes_pls_golite062009 |
| actin binding | 0.79104197850666 | bayes_pls_golite062009 |
| GTPase activator activity | 0.709760900885283 | bayes_pls_golite062009 |
| enzyme activator activity | 0.283509641791735 | bayes_pls_golite062009 |
| catalytic activity | 0.143741655309638 | bayes_pls_golite062009 |
| tropomyosin binding | 0.102409833136912 | bayes_pls_golite062009 |
|
Region A: Residues: [196-340] |
1 11 21 31 41 51
| | | | | |
1 GLKSHSEGLK VVKLYQNGIR PKGVATLIHY GLQYLKNLEI LDLQDNTFTK HASLILAKAL 60
61 PTWKDSLFEL NLNDCLLKTA GSDEVFKVFT EVKFPNLHVL KFEYNEMAQE TIEVSFLPAM 120
121 EKGNLPELEK LEINGNRLDE DSDAL
|
| Detection Method: | |
| Confidence: | 609.228787 |
| Match: | 1k5dC_ |
| Description: | Rna1p (RanGAP1), N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [341-407] |
1 11 21 31 41 51
| | | | | |
1 DLLQSKFDDL EVDDFEEVDS EDEEGEDEED EDEDEKLEEI ETERLEKELL EVQVDDLAER 60
61 LAETEIK
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1k14A_ |
| Description: | No description for 1k14A_ was found. |
