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View Structure Prediction Details

Protein: HFA1
Organism: Saccharomyces cerevisiae
Length: 2123 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HFA1.

Description E-value Query
Range
Subject
Range
ACC1_ARATH - Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1
2757.0 [0..1] [2123..53]
gi|542750, gi|45... - gi|740964|prf||2006242A Ac-CoA carboxylase, gi|542750|pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2...
2727.0 [0..1] [2123..134]
gi|114667807 - gi|114667807|ref|XP_511428.2| PREDICTED: acetyl-Coenzyme A carboxylase alpha [Pan troglodytes]
2700.0 [0..1] [2123..320]

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Predicted Domain #1
Region A:
Residues: [1-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSIRKWAYE TFNDEKIIQF VVMATPDDLH ANSEYIRMAD QYVQVPGGTN NNNYANIDLI  60
   61 LDVAEQTDVD AVWAGWGHAS ENPCLPELLA SSQRKILFIG PPGRAMRSLG DKISSTIVAQ 120
  121 SAKIPCIPWS GSHIDTIHID NKTNFVSVPD DVYVRGCCSS PEDALEKAKL IGFPVMIKAS 180
  181 EGGGGKGIRR VDNEDDFIAL YRQAVNETPG SPMFVMKVVT DARHLEVQLL ADQYGTNITL 240
  241 FGRDCSIQRR HQKIIEEAPV TITKPETFQR MERAAIRLGE LVGYVSAGTV EYLYSPKDDK 300
  301 FYFLELNPRL QVEHPTTEMI SGVNLPATQL QIAMGIPMHM ISDIRKLYGL DPTGTSYIDF 360
  361 KNLKRPSPKG HCISCRITSE DPNEGFKPST GKIHELNFRS SSNVWGYFSV GNNGAIHSFS 420
  421 DSQFGHIFAV GNDRQDAKQN MVLALKDFSI RGEFKTPIEY LIELLETRDF ESNNISTGWL 480
  481 DDLILKNLSS DSKLDPTLAI ICGAAMKAYV FTEKVRNKYL ELLRRGQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2hjwA
Description: No description for 2hjwA was found.

Predicted Domain #2
Region A:
Residues: [529-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPKDFLKTKF PVDFIFDNNR YLFNVAQSSE EQFILSINKS QCEVNVQKLS SDCLLISVDG  60
   61 KCHTVYWKDD IRGTRLSID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.954 b.3.1 Starch-binding domain

Predicted Domain #3
Region A:
Residues: [608-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTIFLEAEL NPTQVISPTP GKLVKYLVRS GDHVFAGQQY AEIEIMKMQM PLVAKSDGVI  60
   61 ELLRQPGSII EAGDVIAKLT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 2dn8A
Description: No description for 2dn8A was found.

Predicted Domain #4
Region A:
Residues: [688-928]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDSPSKANES SLYRGELPVL GPPLIEGSRP NHKLRVLINR LENILNGYHE NSGIETTLKE  60
   61 LIKILRDGRL PYSEWDSQIS TVRNRLPRQL NEGLGNLVKK SVSFPAKELH KLMKRYLEEN 120
  121 TNDHVVYVAL QPLLKISERY SEGLANHECE IFLKLIKKYY AVEKIFENHD IHEERNLLNL 180
  181 RRKDLTNLKK ILCISLSHAN VVAKNKLVTA ILHEYEPLCQ DSSKMSLKFR AVIHDLASLE 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [929-1066]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWAKEVAVKA RSVLLRGIFP PIKKRKEHIK TLLQLHIKDT GAENIHSRNI YSCMRDFGNL  60
   61 IHSNLIQLQD LFFFFGHQDT ALSSIASEIY ARYAYGNYQL KSIKIHKGAP DLLMSWQFSS 120
  121 LRNYLVNSDG ESDEFTKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1067-1314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKPPSTSGKS SANSFGLLVN MRALESLEKT LDEVYEQIHI PEERLSSGEN SLIVNILSPI  60
   61 RYRSENDLIK TLKIKLHENE RGLSKLKVNR ITFAFIAANA PAVKFYSFDG TTYDEISQIR 120
  121 NMDPSYEAPL ELGKMSNYKI RSLPTYDSSI RIFEGISKFT PLDKRFFVRK IINSFMYNDQ 180
  181 KTTEENLKAE INAQVVYMLE HLGAVDISNS DLNHIFLSFN TVLNIPVHRL EEIVSTILKT 240
  241 HETRLFQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1315-2123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RITDVEICIS VECLETKKPA PLRLLISNKS GYVVKIETYY EKIGKNGNLI LEPCSEQSHY  60
   61 SQKSLSLPYS VKDWLQPKRY KAQFMGTTYV YDFPGLFHQA AIQQWKRYFP KHKLNDSFFS 120
  121 WVELIEQNGN LIKVNREPGL NNIGMVAFEI MVQTPEYPEG RNMIVISNDI TYNIGSFGPR 180
  181 EDLFFDRVTN YARERGIPRI YLAANSGAKL GIAEELIPLF RVAWNDPSDP TKGFQYLYLA 240
  241 PKDMQLLKDS GKGNSVVVEH KMVYGEERYI IKAIVGFEEG LGVECLQGSG LIAGATSKAY 300
  301 RDIFTITAVT CRSVGIGSYL VRLGQRTIQV EDKPIILTGA SAINKVLGTD IYTSNLQIGG 360
  361 TQIMYKNGIA HLTASNDMKA IEKIMTWLSY VPAKRDMSPP LLETMDRWDR DVDFKPAKQV 420
  421 PYEARWLIEG KWDSNNNFQS GLFDKDSFFE TLSGWAKGVI VGRARLGGIP VGVIAVETKT 480
  481 IEEIIPADPA NLDSSEFSVK EAGQVWYPNS AFKTAQTIND FNYGEQLPLI ILANWRGFSG 540
  541 GQRDMYNEVL KYGSFIVDAL VDYKQPILIY IPPFGELRGG SWVVIDPTIN PEQMEMYADV 600
  601 ESRGGVLEPD GVVSIKYRKE KMIETMIRLD STYGHLRRTL TEKKLSLEKQ NDLTKRLKIR 660
  661 ERQLIPIYNQ ISIQFADLHD RSTRMLVKGV IRNELEWKKS RRFLYWRLRR RLNEGQVIKR 720
  721 LQKKTCDNKT KMKYDDLLKI VQSWYNDLDV NDDRAVVEFI ERNSKKIDKN IEEFEISLLI 780
  781 DELKKKFEDR RGNIVLEELT RLVDSKRKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1od2A
Description: Acetyl-coenzyme A carboxylase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle