| Protein: | CEP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 608 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CEP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..608] | [1..608] |
|
|
0.008 | [9..38] | [14..43] |
|
|
0.008 | [5..35] | [8..38] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MFNRTTQLKS KHPCSVCTRR KVKCDRMIPC GNCRKRGQDS ECMKSTKLIT ASSSKEYLPD 60
61 LLLFWQNYEY WITNIGLYKT K
|
| Detection Method: |  |
| Confidence: | 24.071898 |
| Match: | 2hapC_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| transcription regulator activity | 2.56733746771213 | bayes_pls_golite062009 |
| DNA binding | 2.39669003719518 | bayes_pls_golite062009 |
| nucleic acid binding | 2.24073515120143 | bayes_pls_golite062009 |
| transcription factor activity | 1.37656394138073 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.671744152078418 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.600827672357843 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.444119306269532 | bayes_pls_golite062009 |
|
Region A: Residues: [82-608] |
1 11 21 31 41 51
| | | | | |
1 QRDLTRTPAN LDTDTEECMF WMNYLQKDQS FQLMNFAMEN LGALYFGSIG DISELYLRVE 60
61 QYWDRRADKN HSVDGKYWDA LIWSVFTMCI YYMPVEKLAE IFSVYPLHEY LGSNKRLNWE 120
121 DGMQLVMCQN FARCSLFQLK QCDFMAHPDI RLVQAYLILA TTTFPYDEPL LANSLLTQCI 180
181 HTFKNFHVDD FRPLLNDDPV ESIAKVTLGR IFYRLCGCDY LQSGPRKPIA LHTEVSSLLQ 240
241 HAAYLQDLPN VDVYREENST EVLYWKIISL DRDLDQYLNK SSKPPLKTLD AIRRELDIFQ 300
301 YKVDSLEEDF RSNNSRFQKF IALFQISTVS WKLFKMYLIY YDTADSLLKV IHYSKVIISL 360
361 IVNNFHAKSE FFNRHPMVMQ TITRVVSFIS FYQIFVESAA VKQLLVDLTE LTANLPTIFG 420
421 SKLDKLVYLT ERLSKLKLLW DKVQLLDSGD SFYHPVFKIL QNDIKIIELK NDEMFSLIKG 480
481 LGSLVPLNKL RQESLLEEED ENNTEPSDFR TIVEEFQSEY NISDILS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [194-362] |
1 11 21 31 41 51
| | | | | |
1 SNKRLNWEDG MQLVMCQNFA RCSLFQLKQC DFMAHPDIRL VQAYLILATT TFPYDEPLLA 60
61 NSLLTQCIHT FKNFHVDDFR PLLNDDPVES IAKVTLGRIF YRLCGCDYLQ SGPRKPIALH 120
121 TEVSSLLQHA AYLQDLPNVD VYREENSTEV LYWKIISLDR DLDQYLNKS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [363-608] |
1 11 21 31 41 51
| | | | | |
1 SKPPLKTLDA IRRELDIFQY KVDSLEEDFR SNNSRFQKFI ALFQISTVSW KLFKMYLIYY 60
61 DTADSLLKVI HYSKVIISLI VNNFHAKSEF FNRHPMVMQT ITRVVSFISF YQIFVESAAV 120
121 KQLLVDLTEL TANLPTIFGS KLDKLVYLTE RLSKLKLLWD KVQLLDSGDS FYHPVFKILQ 180
181 NDIKIIELKN DEMFSLIKGL GSLVPLNKLR QESLLEEEDE NNTEPSDFRT IVEEFQSEYN 240
241 ISDILS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
