YRC Public Data Repository - Protein Structure Prediction

Protein:	GID8
Organism:	Saccharomyces cerevisiae
Length:	455 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GID8.

Description	E-value	Query Range	Subject Range
gi\|38454224, gi\|... - gi\|38454224\|ref\|NP_942038.1\| Bwk1 leukemia-related [Rattus norvegicus], gi\|37359376\|gb\|AAO18337.1\| B... GID8_MOUSE - Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=1 SV=1	223.0	[0..67]	[326..6]
gi\|47229162 - gi\|47229162\|emb\|CAG03914.1\| unnamed protein product [Tetraodon nigroviridis]	223.0	[0..72]	[326..12]
gi\|73992430 - gi\|73992430\|ref\|XP_545179.2\| PREDICTED: similar to BWK-1 isoform 1 [Canis familiaris]	222.0	[0..67]	[326..6]
gi\|109091360, gi... - gi\|109091360\|ref\|XP_001086584.1\| PREDICTED: chromosome 20 open reading frame 11 isoform 2 [Macaca mu... C20orf11 - chromosome 20 open reading frame 11 gi\|114682999, gi... - gi\|55653381\|ref\|XP_525381.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146830... CCDS13510.1_1 - null	221.0	[0..67]	[326..6]
GID8_BOVIN - Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1	220.0	[0..67]	[326..6]
GID8_CHICK - Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1	218.0	[0..67]	[326..6]
gi\|50604085, gi\|... - gi\|50604085\|gb\|AAH77481.1\| MGC82520 protein [Xenopus laevis], gi\|147898815\|ref\|NP_001090234.1\| hypot... jgi\|Xentr4\|29617... - null	216.0	[0..67]	[326..6]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISTLSNET TKSGSCSGQG KNGGKDFTYG KKCFTKEEWK EQVAKYSAMG ELYANKTIHY  60
   61 PLKIQPNSSG GSQDEGFATI QTTPIEPTLP RLLLNYFVSM AYEDSSIRMA KELGFIRNNK 120
  121 DIAVFNDLYK IKERFHIKHL IKLGRINEAM EEINSIFGLE VLEETFNATG SYTGRTDRQQ 180
  181 QQQQQQFDID GDLHFKLLLL NLIEMIRSHH QQENITKDSN DFILNLIQYS QNKLAIKASS 240
  241 SVKKMQELEL AMTLLLFPLS DSADSGSIKL PKSLQNLYSI SLRSKIADLV NEKLLKFIHP 300
  301 RIQFEISNNN SKFPDLLNSD KKIITQNFTV YNNNLVNGSN GTKITHISSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [351-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPINEKMSSN EVTAAANSVW LNQRDGNVGT GSAATTFHNL ENKNYWNQTS ELLSSSNGKE  60
   61 KGLEFNNYYS SEFPYEPRLT QIMKLWCWCE NQLHHNQIGV PRVEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits