YRC Public Data Repository - Protein Structure Prediction

Protein:	SPG4
Organism:	Saccharomyces cerevisiae
Length:	115 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPG4.

Description	E-value	Query Range	Subject Range
gi\|44983199, gi\|... - gi\|45190303\|ref\|NP_984557.1\| AEL303Cp [Ashbya gossypii ATCC 10895], gi\|44983199\|gb\|AAS52381.1\| AEL30... gi\|44983199 - gi\|44983199\|gb\|AAS52381.1\| AEL303Cp [Ashbya gossypii ATCC 10895]	86.0	[0..2]	[114..3]
SPG4_KLULA - Stationary phase protein 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1... gi\|49641226 - gi\|49641226\|emb\|CAH02487.1\| KLLA0B12650p [Kluyveromyces lactis]	71.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFWDAFAV YDKKKHADPS VYGGNHNNTG DSKTQVMFSK EYRQPRTHQQ ENLQSMRRSS  60
   61 IGSQDSSDVE DVKEGRLPAE VEIPKNVDIS NMSQGEFLRL YESLRRGEPD NKVNR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits