YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR099C
Organism:	Saccharomyces cerevisiae
Length:	297 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR099C.

Description	E-value	Query Range	Subject Range
AAPC_PENCL - (Q40784) Putative apospory-associated protein C AAPC_CENCI - Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1	2.0E-90	[3..297]	[29..320]
gi\|38346398, gi\|... - gi\|50929321\|ref\|XP_474188.1\| OSJNBa0011F23.4 [Oryza sativa (japonica cultivar-group)], gi\|38346398\|e...	4.0E-87	[5..297]	[37..326]
YMY9_YEAST - Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C ... gi\|207342341 - gi\|207342341\|gb\|EDZ70132.1\| YMR099Cp-like protein [Saccharomyces cerevisiae AWRI1631] YMR099C - Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase), likely involved in carbohydrate met... gi\|190408328 - gi\|190408328\|gb\|EDV11593.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	6.0E-87	[1..297]	[1..297]
gi\|8777366, gi\|2... - gi\|8777366\|dbj\|BAA96956.1\| apospory-associated protein C [Arabidopsis thaliana], gi\|28059286\|gb\|AAO3...	6.0E-86	[5..297]	[15..304]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-82	[4..297]	[83..370]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIKETDKEV VLTHPADETT SVHILKYGAT VYSWKLKSEE QLWLSTAAKL DGSKPVRGGI  60
   61 PLVFPVFGKN STDEHLSKLP QHGLARNSTW EFLGQTKENP PTVQFGLKPE IANPELTKLW 120
  121 PMDYLLILTV ELGSDYLKTA IEVENTSSSK ELKFNWLFHT YFRIEDIEGT MVSNLAGMKL 180
  181 YDQLLKESYV DKHPVVTFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1l7jA_
Description:	Galactose mutarotase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [200-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QETDVIYQNV SAERAIQIVD KGVQIHTLKR YNLPDTVVWN PWIEKSQGMA DFEPKTGYQQ  60
   61 MICIEPGHVH DFISLAPGKK WNAYQLLCKE ELKYQAIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits