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View Structure Prediction Details

Protein: YMR086W
Organism: Saccharomyces cerevisiae
Length: 960 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR086W.

Description E-value Query
Range
Subject
Range
gi|51012603 - gi|51012603|gb|AAT92595.1| YMR086W [Saccharomyces cerevisiae]
290.0 [0..1] [960..1]
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
279.0 [0..5] [884..758]
IGA0_HAEIN - Immunoglobulin A1 protease autotransporter OS=Haemophilus influenzae GN=iga PE=1 SV=1
IGA0_HAEIN - Immunoglobulin A1 protease autotransporter OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 ...
255.0 [0..421] [948..989]
gi|6006448 - gi|6006448|emb|CAB56789.1| IgA1 protease [Haemophilus influenzae]
253.0 [0..421] [948..989]
gi|11353751 - pir||A81937 IgA-specific metalloendopeptidase (EC 3.4.24.13) NMA0905 [imported] - Neisseria meningit...
gi|121051831, gi... - gi|7379617|emb|CAB84182.1| IgA1 protease [Neisseria meningitidis Z2491], gi|218767823|ref|YP_0023423...
231.0 [0..344] [947..965]
gi|110631441 - gi|110631441|gb|ABG81066.1| immunoglobulin A1 protease precursor [Neisseria meningitidis]
228.0 [0..320] [947..983]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRRTTAPE MEQADPTAVA AAASIGKLLM KKGNQSDNEQ RPTYRSASMT NLRKPSAPKR  60
   61 MSSISSISSE 

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 12.5
Match:
Description: No description for 1l8mA was found.

Predicted Domain #2
Region A:
Residues: [71-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRRSDGKGRP GKINSLTQRS SMGKGDSLNS PLTKEPQHKT RSHNRTSSLP NQRGQQSRNS  60
   61 SGLQRQKSKT HQRISYDEAQ RTFKDFGGPQ ARGILTGQHR TENPSGSIPL RTTRKYIPGP 120
  121 NGLVAIEVPV EKPSNANTSK LLRRSNSAHS ALNARNGSLL RKKVSQESLH SQPKKTSSLG 180
  181 NTSSTQAKKG QKAVQERNLA KKHPINSNVP LIETQVREET DQELKLDNSN SSESETVVNS 240
  241 ENNLEKPSSL NIEKDDLSKL IHENIELESF IEEKGKEKPL NSDQEDVFIS EKTVKGDVQW 300
  301 PKNNRQASTL EKTFNYDNEE KREGNKPVAE HPLPEAEVDD KSVEQL

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.18
Match:
Description: No description for 1g9uA was found.

Predicted Domain #3
Region A:
Residues: [417-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNISSSGSYS AQGSVENSKP ENGNKNLEND TTSSPTQDLD EKSRSIEEKD TLEGTESS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [475-751]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVEKPDNCC EKISGANTSS KKGNVGDTKD EFFDTVEESD QKTSKSNSSK NTDHSNQTEP  60
   61 TPSLAQYLRT SNTYLSRKNQ SKQAEQEKFH KPEAPMVPVT KVVTPIKSAL KKSSGSSNHD 120
  121 SSMYSDNSPA NGAYLSLTTA ENTRLNAQMT MSDSVSRRAS LKRSSIKRPQ SVGQFRSIRS 180
  181 NSPSPPEKIN NKRHSAIPLG TPEKGKPKRN SVMASLSKNS QQIQEPASVY ESNGPNKPKN 240
  241 QINKNIKRGS QIAQNNKPST KDMNSILYPK EPPPRKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [752-960]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEKTRSNES HLGFKKLSLR NGNFEEALSE SYNGQASQNS TNVNRTDTAQ EFFKYLGHSS  60
   61 RFADSDSEDE SQFFNQGPSK YNTETEGNKT SGNKNSNGGN GAFSLFKSKS KQKENNVVSP 120
  121 GVSSPNHTTT DPAITSKKVD KKFSGLSLRA ASEAEPAKNS NPSMTNRLRF SSNPENGESR 180
  181 LPQAQEVSVT KEKKGSFGKK LKKIFGRKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle