Protein: | ABF2 |
Organism: | Saccharomyces cerevisiae |
Length: | 183 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABF2.
Description | E-value | Query Range |
Subject Range |
|
8.0E-36 | [36..179] | [2..156] |
|
9.0E-36 | [36..179] | [2..156] |
|
6.0E-35 | [4..180] | [132..327] |
|
7.0E-35 | [36..179] | [2..156] |
|
3.0E-34 | [37..179] | [3..158] |
|
3.0E-34 | [37..179] | [3..158] |
Region A: Residues: [1-113] |
1 11 21 31 41 51 | | | | | | 1 MNSYSLLTRS FHESSKPLFN LASTLLKASK RTQLRNELIK QGPKRPTSAY FLYLQDHRSQ 60 61 FVKENPTLRP AEISKIAGEK WQNLEADIKE KYISERKKLY SEYQKAKKEF DEK |
Detection Method: | |
Confidence: | 68.36704 |
Match: | 1hme__ |
Description: | HMG1, domains A and B |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 3.04393542109417 | bayes_pls_golite062009 |
DNA binding | 1.88326659692279 | bayes_pls_golite062009 |
nucleic acid binding | 1.85157640081091 | bayes_pls_golite062009 |
chromatin binding | 1.82810083714605 | bayes_pls_golite062009 |
transcription regulator activity | 1.34639198670075 | bayes_pls_golite062009 |
protein binding | 1.33904668423876 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.08208740778246 | bayes_pls_golite062009 |
transcription factor activity | 0.585772620695985 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.45921402500371 | bayes_pls_golite062009 |
transcription factor binding | 0.19768703289845 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.16971196361447 | bayes_pls_golite062009 |
Region A: Residues: [114-183] |
1 11 21 31 41 51 | | | | | | 1 LPPKKPAGPF IKYANEVRSQ VFAQHPDKSQ LDLMKIIGDK WQSLDQSIKD KYIQEYKKAI 60 61 QEYNARYPLN |
Detection Method: | |
Confidence: | 14.9 |
Match: | 1j46A |
Description: | SRY |
Matching Structure (courtesy of the PDB): |