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View Structure Prediction Details

Protein: ARG80
Organism: Saccharomyces cerevisiae
Length: 177 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARG80.

Description E-value Query
Range		 Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 1.0E-40 [49..176] [13..135]
gi|4218160 - gi|4218160|emb|CAA08800.1| MADS-box protein, GAGA1 [Gerbera hybrid cv. 'Terra Regina']
gi|4218160 - gi|4218160|emb|CAA08800.1| MADS-box protein, GAGA1 [Gerbera hybrid cv. 'Terra Regina']
 4.0E-40 [67..176] [22..126]
gi|16549070 - gi|16549070|dbj|BAB70742.1| putative MADS-domain transcription factor MpMADS7 [Magnolia praecocissim...
 2.0E-39 [78..177] [1..98]
gi|195637774, gi... - gi|7328575|gb|AAF59838.1|AF181479_1 MADS-box DNA binding protein [Zea mays], gi|195637774|gb|ACG3835...
 4.0E-39 [78..177] [1..98]
MAD16_ORYSJ - MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2
MAD16_ORYSA - MADS-box transcription factor 16 (OsMADS16) (Protein SUPERWOMAN1) (Protein APETALA3-like) - Oryza sa...
 5.0E-39 [78..177] [1..98]
gi|4103346 - gi|4103346|gb|AAD01744.1| agamous-like putative transcription factor [Cucumis sativus]
 6.0E-39 [62..176] [1..110]
AG_SOLLC - Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1
 9.0E-39 [65..177] [4..111]
GLOB_ANTMA - Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1
 1.0E-38 [78..177] [1..98]

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Predicted Domain #1
Region A:
Residues: [1-177] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNSDGSST SPVEKPITGD VETNEPTKPI RRLSTPSPEQ DQEGDFDEED DDDKFSVSTS  60
   61 TPTPTITKTK DSSDTSTVTR RKQPIRYIEN KTRRHVTFSK RRHGIMKKAY ELSVLTGANI 120
  121 LLLILANSGL VYTFTTPKLE PVVREDEGKS LIRACINASD TPDATDTSPA QEQSPAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 295.758605
Match: 1mnmA_
Description: MCM1 transcriptional regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 4.47820295830817 bayes_pls_golite062009
DNA binding 4.34885522982729 bayes_pls_golite062009
nucleic acid binding 4.22473647889076 bayes_pls_golite062009
sequence-specific DNA binding 3.75742221961238 bayes_pls_golite062009
binding 3.73009730829487 bayes_pls_golite062009
transcription factor activity 3.68208249443337 bayes_pls_golite062009
transcription activator activity 2.70980744336671 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.63280961628615 bayes_pls_golite062009
protein binding 2.32692027935469 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 0.37351258349543 bayes_pls_golite062009
DNA bending activity 0.167327205417291 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle