| Protein: | TAF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 388 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..388] | [1..388] |
|
|
0.0 | [15..386] | [329..693] |
|
|
1.0E-78 | [59..388] | [1..365] |
|
|
7.0E-76 | [23..385] | [549..921] |
|
|
2.0E-70 | [4..384] | [244..659] |
|
|
5.0E-70 | [6..385] | [676..1083] |
|
|
1.0E-68 | [2..386] | [257..684] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MANSPKKPSD GTGVSASDTP KYQHTVPETK PAFNLSPGKA SELSHSLPSP SQIKSTAHVS 60
61 STHNDAAGNT DDSVLPKNVS PTTNLRVESN GDTNNM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-318] |
1 11 21 31 41 51
| | | | | |
1 FSSPAGLALP KKDDKKKNKG TSKADSKDGK ASNSSGQNAQ QQSDPNKMQD VLFSAGIDVR 60
61 EEEALLNSSI NASKSQVQTN NVKIPNHLPF LHPEQVSNYM RKVGKEQNFN LTPTKNPEIL 120
121 DMMSSACENY MRDILTNAIV ISRHRRKAVK INSGRRSEVS AALRAIALIQ KKEEERRVKK 180
181 RIALGLEKED YENKIDSEET LHRASNVTAG LRAGSKKQYG WL
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 9.25279783093877 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| transcription initiation factor activity | 3.96621818094279 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10331930589736 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0792897588268993 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0736756545988504 | bayes_pls_golite062009 |
|
Region A: Residues: [319-388] |
1 11 21 31 41 51
| | | | | |
1 TSSVNKPTSL GAKSSGKVAS DITARGESGL KFREAREEPG IVMRDLLFAL ENRRNSVQTI 60
61 ISKGYAKIRD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
