| Protein: | NGL3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 505 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NGL3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..505] | [1..505] |
|
|
4.0E-84 | [9..494] | [30..501] |
|
|
1.0E-74 | [68..491] | [160..530] |
|
|
5.0E-73 | [48..492] | [194..666] |
|
|
2.0E-72 | [17..493] | [163..597] |
|
|
2.0E-68 | [62..494] | [176..558] |
|
Region A: Residues: [1-407] |
1 11 21 31 41 51
| | | | | |
1 MDSQVEGKIS PSQKESSSTS GLVSPSEDGP AHQKIHRDQL SVDQIKKIRE ERAQKRQVRR 60
61 NSLISQGKDP DFPTPDLQFI ERPFLPINHD NSKGLTPATI QVTQDSLDVK IMTYNTLAQT 120
121 LIRRDFFPES GPALKWHKRS KVLVHELKKY RPDVVSLQEV DYNELNFWQE NFHKLGFDVI 180
181 FKRHEGKTHG LLVAWNNKKF QLDNDWMLDY DNILAGNVIS ARTRTKNIAL IISLYFKGIT 240
241 DSSSRGIIVA NTHLFWHPFG VFERLRQSYL VLQKIQEIKA CSKYNGWHSL LMGDFNTEPE 300
301 EPPYLAITKR PLILKGPIRA MVECSLAYRY SKKRNGEESD QDDEECDEKS RGEGHSDQPQ 360
361 NPKPESFTAT KEEKALVNQL VALHNSLHVK GVSLYGIGYG KVHPENA
|
| Detection Method: |  |
| Confidence: | 50.0 |
| Match: | 1hd7A_ |
| Description: | DNA repair endonuclease Hap1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity, acting on ester bonds | 1.79712722403488 | bayes_pls_golite062009 |
| catalytic activity | 1.76511376991978 | bayes_pls_golite062009 |
| DNA binding | 1.37658575624902 | bayes_pls_golite062009 |
| nuclease activity | 1.32173587797854 | bayes_pls_golite062009 |
| nucleic acid binding | 1.27522193028878 | bayes_pls_golite062009 |
| transcription regulator activity | 1.27444635886918 | bayes_pls_golite062009 |
| hydrolase activity | 1.26623219005539 | bayes_pls_golite062009 |
| binding | 1.15309487870289 | bayes_pls_golite062009 |
| exonuclease activity | 1.00241970456165 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.921825229691632 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.918937034405287 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 0.483115797781113 | bayes_pls_golite062009 |
| phosphatase activity | 0.384661571898828 | bayes_pls_golite062009 |
| protein binding | 0.245431403492424 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 0.234646673057692 | bayes_pls_golite062009 |
| inositol or phosphatidylinositol phosphatase activity | 0.228910502815798 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.218294880470342 | bayes_pls_golite062009 |
| transcription activator activity | 0.110687210838864 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0749803326585898 | bayes_pls_golite062009 |
| transcription factor binding | 0.0509794286384297 | bayes_pls_golite062009 |
|
Region A: Residues: [408-505] |
1 11 21 31 41 51
| | | | | |
1 NGSHGEPGLS NWANTWCGLL DYIFYIEGDH NQDTRQKEPL NAFEGNNNVK IIGYLRMPCA 60
61 QEMPKHSQPF EGEYASDHIS LMCQIRLFFG GEKVHSLK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
