| Protein: | VPS9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 451 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..451] | [1..451] |
|
|
2.0E-85 | [39..373] | [121..434] |
|
|
7.0E-84 | [39..373] | [122..435] |
|
|
1.0E-81 | [39..373] | [121..434] |
|
|
8.0E-79 | [14..349] | [65..393] |
|
|
3.0E-69 | [12..330] | [30..355] |
|
Region A: Residues: [1-451] |
1 11 21 31 41 51
| | | | | |
1 MTDDEKREIL KEFDPFSQLE QANGNPDKDV KFKKDDPNRA AAEETNRDIS AQDKGDEEPF 60
61 YDFQIFIKQL QTPGADPLVK YTKSFLRNFL AQRLLWTVSE EIKLISDFKT FIYDKFTLYE 120
121 PFRSLDNSKM RNAKEGMEKL IMGKLYSRCF SPSLYEILQK PLDDEHMKDL TNDDTLLEKI 180
181 RHYRFISPIM LDIPDTMPNA RLNKFVHLAS KELGKINRFK SPRDKMVCVL NASKVIFGLL 240
241 KHTKLEQNGA DSFIPVLIYC ILKGQVRYLV SNVNYIERFR SPDFIRGEEE YYLSSLQAAL 300
301 NFIMNLTERS LTIEDHEDFE EAYQRNFKQL AEEKEEEEKK KQLEIPDELQ PNGTLLKPLD 360
361 EVTNIVISKF NELFSPIGEP TQEEALKSEQ SNKEEDVSSL IKKIEENERK DTLNTLQNMF 420
421 PDMDPSLIED VCIAKKSRIG PCVDALLSLS E
|
| Detection Method: |  |
| Confidence: | 8.62 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.53503231216012 | bayes_pls_golite062009 |
| GTPase activating protein binding | 1.51214503459935 | bayes_pls_golite062009 |
| binding | 1.29582735439414 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.345541740813359 | bayes_pls_golite062009 |
|
Region A: Residues: [343-451] |
1 11 21 31 41 51
| | | | | |
1 LEIPDELQPN GTLLKPLDEV TNIVISKFNE LFSPIGEPTQ EEALKSEQSN KEEDVSSLIK 60
61 KIEENERKDT LNTLQNMFPD MDPSLIEDVC IAKKSRIGPC VDALLSLSE
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 1mn3A |
| Description: | Vacuolar protein sorting-associated protein vps9 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.47354515839445 | bayes_pls_golite062009 |
| binding | 1.17122954376528 | bayes_pls_golite062009 |
| nucleic acid binding | 0.439354773090226 | bayes_pls_golite062009 |
| ubiquitin binding | 0.39987290017167 | bayes_pls_golite062009 |
| small conjugating protein binding | 0.29743331442479 | bayes_pls_golite062009 |
| catalytic activity | 0.25774924710417 | bayes_pls_golite062009 |
| transcription regulator activity | 0.22096204412796 | bayes_pls_golite062009 |
| enzyme binding | 0.11064857638311 | bayes_pls_golite062009 |
| DNA binding | 0.0423628856798978 | bayes_pls_golite062009 |
