| Protein: | HMG2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1045 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMG2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1045] | [1..1045] |
|
|
0.0 | [179..1038] | [52..888] |
|
|
0.0 | [179..1038] | [52..887] |
|
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0.0 | [179..1038] | [52..887] |
|
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0.0 | [179..1038] | [52..887] |
|
|
0.0 | [179..1038] | [52..888] |
|
|
0.0 | [175..1038] | [48..883] |
|
|
0.0 | [77..1023] | [3..931] |
|
|
0.0 | [7..1038] | [12..1031] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MSLPLKTIVH LVKPFACTAR FSARYPIHVI VVAVLLSAAA YLSVTQSYLN EWKLDSNQYS 60
61 TYLSIK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-533] |
1 11 21 31 41 51
| | | | | |
1 PDELFEKCTH YYRSPVSDTW KLLSSKEAAD IYTPFHYYLS TISFQSKDNS TTLPSLDDVI 60
61 YSVDHTRYLL SEEPKIPTEL VSENGTKWRL RNNSNFILDL HNIYRNMVKQ FSNKTSEFDQ 120
121 FDLFIILAAY LTLFYTLCCL FNDMRKIGSK FWLSFSALSN SACALYLSLY TTHSLLKKPA 180
181 SLLSLVIGLP FIVVIIGFKH KVRLAAFSLQ KFHRISIDKK ITVSNIIYEA MFQEGAYLIR 240
241 DYLFYISSFI GCAIYARHLP GLVNFCILST FMLVFDLLLS ATFYSAILSM KLEINIIHRS 300
301 TVIRQTLEED GVVPTTADII YKDETASEPH FLRSNVAIIL GKASVIGLLL LINLYVFTDK 360
361 LNATILNTVY FDSTIYSLPN FINYKDIGNL SNQVIISVLP KQYYTPLKKY HQIEDSVLLI 420
421 IDSVSNAIRD QFISKLLFFA FAVSISINVY LLNAAKIHTG YMNFQPQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [534-585] |
1 11 21 31 41 51
| | | | | |
1 SNKIDDLVVQ QKSATIEFSE TRSMPASSGL ETPVTAKDII ISEEIQNNEC VY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [586-685] |
1 11 21 31 41 51
| | | | | |
1 ALSSQDEPIR PLSNLVELME KEQLKNMNNT EVSNLVVNGK LPLYSLEKKL EDTTRAVLVR 60
61 RKALSTLAES PILVSEKLPF RNYDYDRVFG ACCENVIGYM
|
| Detection Method: | |
| Confidence: | 1590.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [686-739] |
1 11 21 31 41 51
| | | | | |
1 PIPVGVIGPL IIDGTSYHIP MATTEGCLVA SAMRGCKAIN AGGGATTVLT KDGM
|
|
Region B: Residues: [842-1045] |
1 11 21 31 41 51
| | | | | |
1 TDKKPAAINW IEGRGKSVVA EATIPGDVVK SVLKSDVSAL VELNISKNLV GSAMAGSVGG 60
61 FNAHAANLVT ALFLALGQDP AQNVESSNCI TLMKEVDGDL RISVSMPSIE VGTIGGGTVL 120
121 EPQGAMLDLL GVRGPHPTEP GANARQLARI IACAVLAGEL SLCSALAAGH LVQSHMTHNR 180
181 KTNKANELPQ PSNKGPPCKT SALL
|
| Detection Method: | |
| Confidence: | 1590.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [740-841] |
1 11 21 31 41 51
| | | | | |
1 TRGPVVRFPT LIRSGACKIW LDSEEGQNSI KKAFNSTSRF ARLQHIQTCL AGDLLFMRFR 60
61 TTTGDAMGMN MISKGVEYSL KQMVEEYGWE DMEVVSVSGN YC
|
| Detection Method: | |
| Confidence: | 1590.0 |
| Match: | 1dq8A_ |
| Description: | NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase |
| Matching Structure (courtesy of the PDB): |
|
