YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR445W
Organism:	Saccharomyces cerevisiae
Length:	134 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR445W.

Description	E-value	Query Range	Subject Range
YLR445W - Putative protein of unknown function; transcription is regulated by Ume6p and induced in response to... GMC2_YEAST - Grand meiotic recombination cluster protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...	241.0	[0..1]	[128..1]
gi\|49640885 - gi\|49640885\|emb\|CAH02146.1\| KLLA0B04928p [Kluyveromyces lactis] gi\|50303623, gi\|... - gi\|50303623\|ref\|XP_451753.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640885\|emb\|CAH0214...	58.0	[0..11]	[128..6]
gi\|44983721 - gi\|44983721\|gb\|AAS52820.1\| AER137Wp [Ashbya gossypii ATCC 10895] gi\|44983721, gi\|... - gi\|45190742\|ref\|NP_984996.1\| AER137Wp [Ashbya gossypii ATCC 10895], gi\|44983721\|gb\|AAS52820.1\| AER13...	56.0	[0..40]	[125..23]
gi\|50293931, gi\|... - gi\|50293931\|ref\|XP_449377.1\| hypothetical protein CAGL0M00726g [Candida glabrata CBS138], gi\|4952869...	49.0	[0..9]	[131..4]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTTEVPRQ SSENDQDNNL ERTNSLKSPD VTNNIPSLFK LAAEWQINNP QETFQNHILE  60
   61 NDVLKKINEI THLIRESYKD LSSQDGMMSK QQQEKMDWDL FCTVPVNIIE QYTKDMDEIY 120
  121 EKMERLAKVS IGRN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits