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View Structure Prediction Details

Protein: BER1
Organism: Saccharomyces cerevisiae
Length: 274 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BER1.

Description E-value Query
Range		 Subject
Range
SRR1L_YEAST - SRR1-like protein BER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BER1 PE=1 SV=1
BER1 - Protein involved in microtubule-related processes, N-acetylation; GFP-fusion protein localizes to th...
 0.0 [1..274] [1..274]
SRR1L_SCHPO - SRR1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC14C8.13 PE=3 SV=1
SPBC14C8.13 - SRR1 family protein
 9.0E-56 [27..196] [43..211]
SRR1L_MOUSE, SRR... - (Q8K2M3) SRR1-like protein (Fragment), (Q8K2M3) SRR1-like protein (Fragment)
 8.0E-49 [20..185] [54..234]
SRR1_ARATH - Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2
 6.0E-41 [27..168] [62..215]
gi|220950122, gi... - gi|220960490|gb|ACL92781.1| CG7988-PA [synthetic construct], gi|220950122|gb|ACL87604.1| CG7988-PA [...
CG7988-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7988 (CG7988, FBgn0038582). It is a protein...
 3.0E-34 [40..167] [67..193]

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Predicted Domain #1
Region A:
Residues: [1-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKASGTKF KKTGKKVVPA KAFEEIVQTN RDVLKKSAFL SDLLENLQPH LNNIKKIRCV  60
   61 AIGNFKEDFP ATYQFALLLE ITDYIKSEDE RDVVVSLYDP IFTKEEIQYL KSLGSKWLIE 120
  121 EEFSENDAID YESVLYFLPH APLDLTENIL SSQRPHLWLA NNMISHTDRY TKAKLCENYP 180
  181 NLSKLVHYLQ TNAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-274] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEVKKAHDVD GFATFIPKRK RKNRNNSSKL KVTPSDIDYD SIAPKFKSCQ ILTDFDEGKY  60
   61 LKEKPWINSF SDLTLHAIEY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle