| Protein: | BER1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 274 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BER1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..274] | [1..274] |
|
|
9.0E-56 | [27..196] | [43..211] |
|
|
8.0E-49 | [20..185] | [54..234] |
|
|
6.0E-41 | [27..168] | [62..215] |
|
|
3.0E-34 | [40..167] | [67..193] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MDFKASGTKF KKTGKKVVPA KAFEEIVQTN RDVLKKSAFL SDLLENLQPH LNNIKKIRCV 60
61 AIGNFKEDFP ATYQFALLLE ITDYIKSEDE RDVVVSLYDP IFTKEEIQYL KSLGSKWLIE 120
121 EEFSENDAID YESVLYFLPH APLDLTENIL SSQRPHLWLA NNMISHTDRY TKAKLCENYP 180
181 NLSKLVHYLQ TNAP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [195-274] |
1 11 21 31 41 51
| | | | | |
1 PEVKKAHDVD GFATFIPKRK RKNRNNSSKL KVTPSDIDYD SIAPKFKSCQ ILTDFDEGKY 60
61 LKEKPWINSF SDLTLHAIEY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.346 | c.47.1 | Thioredoxin-like |
| View | Download | 0.450 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.341 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.420 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.336 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.335 | a.3.1 | Cytochrome c |
| View | Download | 0.315 | a.3.1 | Cytochrome c |
| View | Download | 0.296 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.280 | a.74.1 | Cyclin-like |
| View | Download | 0.266 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.261 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.249 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.234 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.228 | d.9.1 | Interleukin 8-like chemokines |
