| Protein: | REH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 432 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..360] | [205..590] |
|
|
0.0 | [3..362] | [391..750] |
|
|
0.0 | [2..362] | [396..812] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MSSTFFTCNC CVIQFKTSDL QRYHMKTEWH RYNLKRRIAN LPPIGAEQFA EKLQISEKEQ 60
61 AENQVDEFGF PVLKPVMNQS NALPQKQKKP IKSKRG
|
| Detection Method: |  |
| Confidence: | 27.0 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [97-289] |
1 11 21 31 41 51
| | | | | |
1 RKVGTNLLKR KDRDIAKEKQ NRSVSPSGSI SSQLSNLTVG TENTNTDYGE DTVSEYGFTS 60
61 DSNYEYATSD EELDIADKPS DKENEKITIT ECIYCGKDNK EVERNVKHMF SEHGLFIPER 120
121 SYLIDLNGLL EFLIKMIVID HNCLCCNFHG SGLESIRAHM ASKRHCRLPY ETKEERQLFA 180
181 PFYDFTYDDH SIS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.36961042761402 | bayes_pls_golite062009 |
| DNA binding | 1.83298509797997 | bayes_pls_golite062009 |
| nucleic acid binding | 1.81905872620454 | bayes_pls_golite062009 |
| transcription regulator activity | 1.79634171647159 | bayes_pls_golite062009 |
| RNA binding | 1.69160965456631 | bayes_pls_golite062009 |
| transcription factor activity | 0.972881822816115 | bayes_pls_golite062009 |
| transcription activator activity | 0.953363449552372 | bayes_pls_golite062009 |
| protein binding | 0.852654490075478 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.246568450747506 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.095249486073484 | bayes_pls_golite062009 |
| chromatin binding | 0.0383915131562336 | bayes_pls_golite062009 |
|
Region A: Residues: [290-432] |
1 11 21 31 41 51
| | | | | |
1 KNLQNDRAIT SKLSSVYGAK NDEEDGEVDI TLVSSENDIN ANYTTVSIDE SGLELTLPTG 60
61 ARLGHRAGQR YYRQNLPSQP NPNESRRTIT AADRRMVSGV TEKQYKKGMK KMQQLEKNAI 120
121 NTQIRREIKR VNFQTHYRDE LLQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
