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View Structure Prediction Details

Protein: CDC3
Organism: Saccharomyces cerevisiae
Length: 520 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC3.

Description E-value Query
Range
Subject
Range
CDC3 - Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recrui...
0.0 [1..520] [1..520]
gi|220955920, gi... - gi|220955920|gb|ACL90503.1| pnut-PA [synthetic construct], gi|220946224|gb|ACL85655.1| pnut-PA [synt...
pnut-PA, pnut-PB - The gene peanut is referred to in FlyBase by the symbol Dmel\pnut (CG8705, FBgn0013726). It is a pro...
0.0 [49..518] [62..518]
SEPT4 - septin 4
0.0 [30..479] [59..476]
SEPT7_RAT - Septin-7 OS=Rattus norvegicus GN=Sept7 PE=1 SV=1
0.0 [70..517] [4..433]
SEPT7_MOUSE - Septin-7 OS=Mus musculus GN=Sept7 PE=1 SV=1
0.0 [70..517] [4..433]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKEEQVSI KQDPEQEERQ HDQFNDVQIK QESQDHDGVD SQYTNGTQND DSERFEAAES  60
   61 DVKVEPGLGM GITSSQSEKG QVLPDQPEIK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIRRQINGYV GFANLPKQWH RRSIKNGFSF NLLCVGPDGI GKTTLMKTLF NNDDIEANLV  60
   61 KDYEEELAND QEEEEGQGEG HENQSQEQRH KVKIKSYESV IEENGVKLNL NVIDTEGFGD 120
  121 FLNNDQKSWD PIIKEIDSRF DQYLDAEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1jnyA_
Description: Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [239-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KINRHSINDK RIHACLYFIE PTGHYLKPLD LKFMQSVYEK CNLIPVIAKS DI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [291-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTDEEILSFK KTIMNQLIQS NIELFKPPIY SNDDAENSHL SERLFSSLPY AVIGSNDIVE  60
   61 NYSGNQVRGR SYPWGVIEVD NDNHSDFNLL KNLLIKQFME ELKERTSKIL YENYRSSKLA 120
  121 KLGIKQDNSV FKEFDPISKQ LEEKTLHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1e5wA_
Description: Moesin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [439-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKLAKLEIEM KTVFQQKVSE KEKKLQKSET ELFARHKEMK EKLTKQLKAL EDKKKQLELS  60
   61 INSASPNVNH SPVPTKKKGF LR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 1dg3A_
Description: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle