| Protein: | CDC3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 520 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..520] | [1..520] |
|
|
0.0 | [49..518] | [62..518] |
|
|
0.0 | [30..479] | [59..476] |
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0.0 | [70..517] | [4..433] |
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|
0.0 | [70..517] | [4..433] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MSLKEEQVSI KQDPEQEERQ HDQFNDVQIK QESQDHDGVD SQYTNGTQND DSERFEAAES 60
61 DVKVEPGLGM GITSSQSEKG QVLPDQPEIK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.285 | 0.112 | axial cellular bud site selection | a.118.1 | ARM repeat |
| View | Download | 0.285 | N/A | N/A | a.118.1 | ARM repeat |
|
Region A: Residues: [91-238] |
1 11 21 31 41 51
| | | | | |
1 FIRRQINGYV GFANLPKQWH RRSIKNGFSF NLLCVGPDGI GKTTLMKTLF NNDDIEANLV 60
61 KDYEEELAND QEEEEGQGEG HENQSQEQRH KVKIKSYESV IEENGVKLNL NVIDTEGFGD 120
121 FLNNDQKSWD PIIKEIDSRF DQYLDAEN
|
| Detection Method: | |
| Confidence: | 3.154902 |
| Match: | 1jnyA_ |
| Description: | Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [239-290] |
1 11 21 31 41 51
| | | | | |
1 KINRHSINDK RIHACLYFIE PTGHYLKPLD LKFMQSVYEK CNLIPVIAKS DI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.386 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.385 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.257 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.254 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.237 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.213 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
|
Region A: Residues: [291-438] |
1 11 21 31 41 51
| | | | | |
1 LTDEEILSFK KTIMNQLIQS NIELFKPPIY SNDDAENSHL SERLFSSLPY AVIGSNDIVE 60
61 NYSGNQVRGR SYPWGVIEVD NDNHSDFNLL KNLLIKQFME ELKERTSKIL YENYRSSKLA 120
121 KLGIKQDNSV FKEFDPISKQ LEEKTLHE
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| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1e5wA_ |
| Description: | Moesin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-520] |
1 11 21 31 41 51
| | | | | |
1 AKLAKLEIEM KTVFQQKVSE KEKKLQKSET ELFARHKEMK EKLTKQLKAL EDKKKQLELS 60
61 INSASPNVNH SPVPTKKKGF LR
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1dg3A_ |
| Description: | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
