| Protein: | RED1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 827 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RED1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..827] | [1..827] |
|
|
0.0 | [57..822] | [61..851] |
|
Region A: Residues: [1-320] |
1 11 21 31 41 51
| | | | | |
1 MEGLKKKIFG VCLKNDLAQT RNETKGIHYG LMTLETSKQL QEFLHLLVIK REVIQNFELL 60
61 FHIINVAVKI TDSNLPSDDI WHFILKLRFS SEINIDEDSK VLNYLLETGI AMENPVSWKC 120
121 LAVISSILSS VPQSKKIITN LIETEHAKKI GQLFDNIQDL QQGNFLVEIL SNCFKKSASN 180
181 SKKVEKIPQL WQSRSKNKFF FENEFYPFSS KNGSLQTCQF LCNNFMSTLS FTGILRQVSY 240
241 SGSETLKNLR IFKKKDDENS YFIQCIYNKI YLWLDEKAPL EFERKKIRIT KNLKNKIQIK 300
301 LRQPFHECVR TTADKTALLF
|
| Detection Method: |  |
| Confidence: | 2.016 |
| Match: | |
| Description: | No description for 1be3C_ was found. |
| Term | Confidence | Notes |
| binding | 1.81809833018345 | bayes_pls_golite062009 |
| nucleic acid binding | 0.438940591104341 | bayes_pls_golite062009 |
| protein binding | 0.391512016855874 | bayes_pls_golite062009 |
|
Region A: Residues: [321-409] |
1 11 21 31 41 51
| | | | | |
1 NKTKGFQLEF EDEKLGETFF HNVNNIPKIS EVQNFLVLDY IEEEPENEGE EEEQIGRADE 60
61 QKEDEEEESL DELSTPMVYP IKSSIPHNH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [410-574] |
1 11 21 31 41 51
| | | | | |
1 NEKVQLVTPD RSVSIRSDEW DLKSNTEDEE GNVLADLKIS STKETKRQTD YVHIDSEDQS 60
61 PVVSAQMRKM RRESTKTLEI LRQEFKDKDV QNKEDQSEQI QNPFVNTSSL VVGKSCLVNP 120
121 KEKPNIDQTV VGITELKSNS SIKKRDINIL DTIFGQPPSK KQKQF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [575-737] |
1 11 21 31 41 51
| | | | | |
1 HKKEKKKQQK KLTNFKPIID VPSQDKRNLR SNAPTKPKSI KVSKLRTDKK VTGEKSSPET 60
61 AAEKVDDQTV RSNDEQAMSR ATKEKCFPDV NEGKEITKDD AKVSLESKKN NETFVDSSVV 120
121 EKHTPPDKDC NNCNITDILE STTVIDLQSP HGLSAPGQNT FTN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [738-827] |
1 11 21 31 41 51
| | | | | |
1 KLQEQIYSSI NHFSNELVRK ISIINQELNK KILKELSEKY QKLFSELQDN FQNDTNEMLK 60
61 FMGEIKDMMN LPEDQLVHAI RTRKFDNNKR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.966 | 0.019 | synaptonemal complex | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
