| Protein: | MMR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 491 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..491] | [1..491] |
|
|
0.001 | [305..483] | [12..187] |
|
Region A: Residues: [1-302] |
1 11 21 31 41 51
| | | | | |
1 MNSPTMKSEQ LTPKLSPMSF CLDDQRNAGS FQNLLNSPTK LKLDTGPIGN SLLYPTSLSK 60
61 LSELSRGGRS KQRRGSDTMR SVSPIRFQFL NNTPKMLKPE YLSQTTSNLP LLSALLKNSK 120
121 KTTSEGQNSN PDPLNIEKNI IKQSIKDKLE QLRSSESVAQ VQKKERNPPS FEAKVCAEEP 180
181 ILRKNAEGLL PSYVPVPATP LEDPENHGVR KVEDKGLRVV SGGSTQCLST EVNELPKDLN 240
241 LDNLPTDNNG FVQYGLKGNN NNNRYSFISS TSTDYEPEWC DGQQHISMQM ASMANAEEAN 300
301 SR
|
| Detection Method: |  |
| Confidence: | 7.59 |
| Match: | 1iu4A |
| Description: | Microbial transglutaminase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.00387658000549 | bayes_pls_golite062009 |
| protein binding | 1.49557135231286 | bayes_pls_golite062009 |
|
Region A: Residues: [303-491] |
1 11 21 31 41 51
| | | | | |
1 EKSNLDIKIK QLELEITELK LQNEKLVHSM TTNRYIEERF MLEVMKDPSI QAQRSQRDIE 60
61 RKVKQLEKKF FNCKKVLKKL TESSAVVATS TSKTEGNSAR IPCPKTRLAR VSVLDLKKIE 120
121 EQPDSSSGTS SEEDHLTNDD TDANTSEDLN VAFEEEPTSA ISTTASVQSG ESKRGFQLNL 180
181 PVQVEKKEK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
