| Protein: | DIP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 943 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [30..700] | [867..1495] |
|
|
0.0 | [1..943] | [1..943] |
|
|
0.0 | [20..729] | [1009..1660] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MVKSYQRFEQ AAAFGVIASN ANCVWIPASS GNSNGSGPGQ LITSALEDVN IWDIKTGDLV 60
61 SKLSDG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-151] |
1 11 21 31 41 51
| | | | | |
1 LPPGASDARG AKPAECTYLE AHKDTDLLAV GYADGVIKVW DLMSKTVLLN FNGHKAAITL 60
61 LQFDGTGTRL ISGSKDSNII VWDLV
|
| Detection Method: | |
| Confidence: | 8.065502 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [152-191] |
1 11 21 31 41 51
| | | | | |
1 GEVGLYKLRS HKDSITGFWC QGEDWLISTS KDGMIKLWDL
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [192-242] |
1 11 21 31 41 51
| | | | | |
1 KTHQCIETHI AHTGECWGLA VKDDLLITTG TDSQVKIWKL DIENDKMGGK L
|
| Detection Method: | |
| Confidence: | 5.853872 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [243-309] |
1 11 21 31 41 51
| | | | | |
1 TEMGIFEKQS KQRGLKIEFI TNSSDKTSFF YIQNADKTIE TFRIRKEEEI ARGLKKREKR 60
61 LKEKGLT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.867 | 0.022 | small nucleolar ribonucleoprotein complex | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
|
Region A: Residues: [310-389] |
1 11 21 31 41 51
| | | | | |
1 EEEIAKSIKE SYSSFILHPF QTIRSLYKIK SASWTTVSSS KLELVLTTSS NTIEYYSIPY 60
61 EKRDPTSPAP LKTHTIELQG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [390-729] |
1 11 21 31 41 51
| | | | | |
1 QRTDVRSIDI SDDNKLLATA SNGSLKIWNI KTHKCIRTFE CGYALTCKFL PGGLLVILGT 60
61 RNGELQLFDL ASSSLLDTIE DAHDAAIWSL DLTSDGKRLV TGSADKTVKF WDFKVENSLV 120
121 PGTKNKFLPV LKLHHDTTLE LTDDILCVRV SPDDRYLAIS LLDNTVKVFF LDSMKFYLSL 180
181 YGHKLPVLSI DISFDSKMII TSSADKNIKI WGLDFGDCHK SLFAHQDSIM NVKFLPQSHN 240
241 FFSCSKDAVV KYWDGEKFEC IQKLYAHQSE VWALAVATDG GFVVSSSHDH SIRIWEETED 300
301 QVFLEEEKEK ELEEQYEDTL LTSLEEGNGD DAFKADASGE
|
| Detection Method: | |
| Confidence: | 251.927757 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [730-943] |
1 11 21 31 41 51
| | | | | |
1 GVEDEASGVH KQTLESLKAG ERLMEALDLG IAEIEGLEAY NRDMKLWQRK KLGEAPIKPQ 60
61 GNAVLIAVNK TPEQYIMDTL LRIRMSQLED ALMVMPFSYV LKFLKFIDTV MQNKTLLHSH 120
121 LPLICKNLFF IIKFNHKELV SQKNEELKLQ INRVKTELRS ALKSTEDDLG FNVQGLKFVK 180
181 QQWNLRHNYE FVDEYDQQEK ESNSARKRVF GTVI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
