| Protein: | DIP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 943 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [30..700] | [867..1495] |
|
|
0.0 | [1..943] | [1..943] |
|
|
0.0 | [20..729] | [1009..1660] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MVKSYQRFEQ AAAFGVIASN ANCVWIPASS GNSNGSGPGQ LITSALEDVN IWDIKTGDLV 60
61 SKLSDG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.361 | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.491 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.361 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.364 | a.15.1 | TAF(II)230 TBP-binding fragment |
| View | Download | 0.334 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.331 | a.4.1 | Homeodomain-like |
| View | Download | 0.327 | a.64.1 | Saposin |
| View | Download | 0.317 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.317 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.317 | a.64.1 | Saposin |
| View | Download | 0.308 | b.36.1 | PDZ domain-like |
| View | Download | 0.297 | a.39.1 | EF-hand |
| View | Download | 0.294 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.284 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.274 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.267 | a.64.1 | Saposin |
| View | Download | 0.260 | b.36.1 | PDZ domain-like |
| View | Download | 0.252 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.248 | b.36.1 | PDZ domain-like |
| View | Download | 0.244 | d.10.1 | DNA-binding domain |
| View | Download | 0.238 | a.64.1 | Saposin |
| View | Download | 0.236 | a.46.1 | Methionine synthase domain |
| View | Download | 0.234 | d.120.1 | Cytochrome b5 |
| View | Download | 0.234 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.234 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.231 | a.112.1 | Description not found. |
| View | Download | 0.224 | d.120.1 | Cytochrome b5 |
| View | Download | 0.223 | a.39.1 | EF-hand |
| View | Download | 0.213 | b.36.1 | PDZ domain-like |
| View | Download | 0.213 | a.64.1 | Saposin |
| View | Download | 0.213 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.208 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.201 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.200 | a.39.1 | EF-hand |
|
Region A: Residues: [67-151] |
1 11 21 31 41 51
| | | | | |
1 LPPGASDARG AKPAECTYLE AHKDTDLLAV GYADGVIKVW DLMSKTVLLN FNGHKAAITL 60
61 LQFDGTGTRL ISGSKDSNII VWDLV
|
| Detection Method: | |
| Confidence: | 8.065502 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [152-191] |
1 11 21 31 41 51
| | | | | |
1 GEVGLYKLRS HKDSITGFWC QGEDWLISTS KDGMIKLWDL
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [192-242] |
1 11 21 31 41 51
| | | | | |
1 KTHQCIETHI AHTGECWGLA VKDDLLITTG TDSQVKIWKL DIENDKMGGK L
|
| Detection Method: | |
| Confidence: | 5.853872 |
| Match: | PF00400 |
| Description: | WD domain, G-beta repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.798 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.602 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.567 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.566 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.550 | N/A | N/A | a.7.1 | Spectrin repeat |
|
Region A: Residues: [243-309] |
1 11 21 31 41 51
| | | | | |
1 TEMGIFEKQS KQRGLKIEFI TNSSDKTSFF YIQNADKTIE TFRIRKEEEI ARGLKKREKR 60
61 LKEKGLT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [310-389] |
1 11 21 31 41 51
| | | | | |
1 EEEIAKSIKE SYSSFILHPF QTIRSLYKIK SASWTTVSSS KLELVLTTSS NTIEYYSIPY 60
61 EKRDPTSPAP LKTHTIELQG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1c5kA_ |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [390-729] |
1 11 21 31 41 51
| | | | | |
1 QRTDVRSIDI SDDNKLLATA SNGSLKIWNI KTHKCIRTFE CGYALTCKFL PGGLLVILGT 60
61 RNGELQLFDL ASSSLLDTIE DAHDAAIWSL DLTSDGKRLV TGSADKTVKF WDFKVENSLV 120
121 PGTKNKFLPV LKLHHDTTLE LTDDILCVRV SPDDRYLAIS LLDNTVKVFF LDSMKFYLSL 180
181 YGHKLPVLSI DISFDSKMII TSSADKNIKI WGLDFGDCHK SLFAHQDSIM NVKFLPQSHN 240
241 FFSCSKDAVV KYWDGEKFEC IQKLYAHQSE VWALAVATDG GFVVSSSHDH SIRIWEETED 300
301 QVFLEEEKEK ELEEQYEDTL LTSLEEGNGD DAFKADASGE
|
| Detection Method: | |
| Confidence: | 251.927757 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [730-943] |
1 11 21 31 41 51
| | | | | |
1 GVEDEASGVH KQTLESLKAG ERLMEALDLG IAEIEGLEAY NRDMKLWQRK KLGEAPIKPQ 60
61 GNAVLIAVNK TPEQYIMDTL LRIRMSQLED ALMVMPFSYV LKFLKFIDTV MQNKTLLHSH 120
121 LPLICKNLFF IIKFNHKELV SQKNEELKLQ INRVKTELRS ALKSTEDDLG FNVQGLKFVK 180
181 QQWNLRHNYE FVDEYDQQEK ESNSARKRVF GTVI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
