Protein: | YPS1 |
Organism: | Saccharomyces cerevisiae |
Length: | 569 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPS1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..569] | [1..569] |
|
0.0 | [98..477] | [22..379] |
|
0.0 | [92..477] | [21..387] |
|
0.0 | [98..477] | [22..387] |
|
0.0 | [92..477] | [21..387] |
|
0.0 | [98..477] | [22..379] |
|
0.0 | [98..477] | [23..387] |
Region A: Residues: [1-139] |
1 11 21 31 41 51 | | | | | | 1 MKLKTVRSAV LSSLFASQVL GKIIPAANKR DDDSNSKFVK LPFHKLYGDS LENVGSDKKP 60 61 EVRLLKRADG YEEIIITNQQ SFYSVDLEVG TPPQNVTVLV DTGSSDLWIM GSDNPYCSSN 120 121 SMGSSRRRVI DKRDDSSSG |
Detection Method: | |
Confidence: | 14.75 |
Match: | 1qdmA |
Description: | (Pro)phytepsin; Plant acid proteinase, phytepsin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [140-152] |
1 11 21 31 41 51 | | | | | | 1 GSLINDINPF GWL |
Region B: Residues: [290-326] |
1 11 21 31 41 51 | | | | | | 1 KSNTYSLYLN DSDAMHGTIL FGAVDHSKYT GTLYTIP |
Region C: Residues: [460-492] |
1 11 21 31 41 51 | | | | | | 1 NAYVVYDLEN LEISMAQARY NTTSENIEII TSS |
Detection Method: | |
Confidence: | 1346.522879 |
Match: | 1ypsA_ |
Description: | No description for 1ypsA_ was found. |
Term | Confidence | Notes |
aspartic-type endopeptidase activity | 7.28637514153772 | bayes_pls_golite062009 |
aspartic-type peptidase activity | 7.28637514153772 | bayes_pls_golite062009 |
peptidase activity | 5.78181196721293 | bayes_pls_golite062009 |
endopeptidase activity | 5.40359198075797 | bayes_pls_golite062009 |
peptidase activity, acting on L-amino acid peptides | 5.39972232367526 | bayes_pls_golite062009 |
hydrolase activity | 3.97352810629953 | bayes_pls_golite062009 |
catalytic activity | 1.54514410489082 | bayes_pls_golite062009 |
binding | 0.742107862879277 | bayes_pls_golite062009 |
protein binding | 0.401296299316154 | bayes_pls_golite062009 |
Region A: Residues: [153-289] |
1 11 21 31 41 51 | | | | | | 1 TGTGSAIGPT ATGLGGGSGT ATQSVPASEA TMDCQQYGTF STSGSSTFRS NNTYFSISYG 60 61 DGTFASGTFG TDVLDLSDLN VTGLSFAVAN ETNSTMGVLG IGLPELEVTY SGSTASHSGK 120 121 AYKYDNFPIV LKNSGAI |
Region B: Residues: [327-459] |
1 11 21 31 41 51 | | | | | | 1 IVNTLSASGF SSPIQFDVTI NGIGISDSGS SNKTLTTTKI PALLDSGTTL TYLPQTVVSM 60 61 IATELGAQYS SRIGYYVLDC PSDDSMEIVF DFGGFHINAP LSSFILSTGT TCLLGIIPTS 120 121 DDTGTILGDS FLT |
Detection Method: | |
Confidence: | 1346.522879 |
Match: | 1ypsA_ |
Description: | No description for 1ypsA_ was found. |
Region A: Residues: [493-569] |
1 11 21 31 41 51 | | | | | | 1 VPSAVKAPGY TNTWSTSASI VTGGNIFTVN SSQTASFSGN LTTSTASATS TSSKRNVGDH 60 61 IVPSLPLTLI SLLFAFI |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.382 | d.19.1 | MHC antigen-recognition domain |
View | Download | 0.263 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.368 | a.150.1 | Anti-sigma factor AsiA |
View | Download | 0.565 | d.82.1 | Copper amine oxidase, domain N |
View | Download | 0.251 | d.15.6 | Superantigen toxins, C-terminal domain |
View | Download | 0.246 | a.60.5 | Barrier-to-autointegration factor, BAF |
View | Download | 0.223 | d.15.4 | 2Fe-2S ferredoxin-like |