| Protein: | CHA4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 648 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHA4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..648] | [1..648] |
|
|
5.0E-99 | [2..628] | [8..654] |
|
|
1.0E-96 | [4..624] | [30..666] |
|
|
7.0E-89 | [2..625] | [1..630] |
|
|
8.0E-83 | [52..602] | [66..599] |
|
|
8.0E-78 | [31..617] | [26..635] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MMLEPSPPPL TTTVTPSLPS SLKKSVTDND QNNNNVPRKR KLACQNCRRR RRKCNMEKPC 60
61 SNCIKFRTEC VFTQQDLRNK RYSTTYVEAL QSQIRSLKEQ LQILSSSSST IASNALSS
|
| Detection Method: |  |
| Confidence: | 36.30103 |
| Match: | 1cld__ |
| Description: | CD2-Lac9 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [119-173] |
1 11 21 31 41 51
| | | | | |
1 LKNNSDHGDA PNEKILKYGE TAQSALPSSE SNDENESDAF TKKMPSESPP PVGTN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [174-202] |
1 11 21 31 41 51
| | | | | |
1 SIYPSNSLSI IKKKTDGSTR YQQQQVSLK
|
|
Region B: Residues: [374-648] |
1 11 21 31 41 51
| | | | | |
1 WGCYIADHLI AILFGRSTSL RLSNSTVPET DELPEIETGI EEYIYDPKVI LSTANPLKKL 60
61 IVLSRITEIF ASKIFSPNET LLQRSEYLAK FNLEVYNWRR DLPPELQWTK RSLMEMTDFN 120
121 PTIAYVWFHY YIVLISYNKP FIYEIKQSRE LVEGYVDELY YLLKVWKNKF KTFEKATIYM 180
181 IYSAILAIQC MKSNLIKKDR KQDFLNFLSA PTLNYELARK FIENSEDALH NSETMDLLGT 240
241 LSHGNDFALE YNFDFTLLNE IDMLIGGNTN DGLSK
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [203-221] |
1 11 21 31 41 51
| | | | | |
1 NLSRSPLILR SLSLFFKWL
|
|
Region B: Residues: [238-248] |
1 11 21 31 41 51
| | | | | |
1 FFGDTNTKSY Y
|
|
Region C: Residues: [347-373] |
1 11 21 31 41 51
| | | | | |
1 HLNPEAWSNV YEDELSIMDF EVRSRIY
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [222-237] |
1 11 21 31 41 51
| | | | | |
1 YPGHYLFIHR ETFLSA
|
|
Region B: Residues: [249-346] |
1 11 21 31 41 51
| | | | | |
1 CSEELVFAIA ALGSLISYKS ETELFQQSEV FYQRAKTIVL KKIFQLEDSS LAESSSSSKL 60
61 AIIQTLLCLA FYDIGSGENP MAWYLSGLAF RIAHEIGL
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
