| Protein: | SSK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 712 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSK1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..712] | [1..712] |
|
|
0.0 | [225..655] | [318..738] |
|
|
0.0 | [234..652] | [333..737] |
|
|
0.0 | [225..652] | [320..734] |
|
|
0.0 | [225..655] | [334..754] |
|
|
0.0 | [225..655] | [334..754] |
|
|
0.0 | [225..652] | [320..737] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MLNSALLWKV WLRIDNSTDE VNQPIAVQFD EIDTVDDLKS RFFQKLSSTR WREINDNASI 60
61 AIGLYAPKFD NQADNTSSNN TNDNSCRSKS NGAGSGANLS VNSNTKSSVS PTAGSFGLSK 120
121 DLAKDRNVLQ HPKPTQKRGA LYDAFAAVPT VAATTNVDFP PNEAPMLSPQ RPYSTSPKQF 180
181 PAT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [184-314] |
1 11 21 31 41 51
| | | | | |
1 TKSPLLRFAS VSPYPKFHSD NQIMASAGLT YVSPHNKNKY TRPLIRKGLN FTTESVNDCT 60
61 YKIIFEPDEL AINIYKELFG TMGSQPASQP LLIFSNVNLR QDVPPLDILN VVDYVPTNEE 120
121 ISQQKTQPTD H
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [315-497] |
1 11 21 31 41 51
| | | | | |
1 GAVGVFHLDD HISPGEQGLK QTIGDKADLK GKDGNSSPQE FKLITDEEQL RRASQELKDE 60
61 EKDAESPWQA ILLLPKGYKG GVDFRNKPVA HTDSSFNNED TITHSELEVN TGSPSQESGS 120
121 LNEAGIGITQ PMSEVQRRKE DVTPASPILT SSQTPHYSNS LYNAPFAVSS PPDPLPNLFT 180
181 TTS
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1bxdA_ |
| Description: | Histidine kinase domain of the osmosensor EnvZ |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-712] |
1 11 21 31 41 51
| | | | | |
1 EKVFPKINVL IVEDNVINQA ILGSFLRKHK ISYKLAKNGQ EAVNIWKEGG LHLIFMDLQL 60
61 PVLSGIEAAK QIRDFEKQNG IGIQKSLNNS HSNLEKGTSK RFSQAPVIIV ALTASNSQMD 120
121 KRKALLSGCN DYLTKPVNLH WLSKKITEWG CMQALIDFDS WKQGESRMTD SVLVKSPQKP 180
181 IAPSNPHSFK QATSMTPTHS PVRKNSNLSP TQIEL
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1kgsA_ |
| Description: | PhoB; PhoB receiver domain |
Matching Structure (courtesy of the PDB): |
|
