YRC Public Data Repository - Protein Structure Prediction

Protein:	PSR1
Organism:	Saccharomyces cerevisiae
Length:	427 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSR1.

Description	E-value	Query Range	Subject Range
gi\|207343198 - gi\|207343198\|gb\|EDZ70734.1\| YLR019Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941187 - gi\|151941187\|gb\|EDN59565.1\| protein phosphatase [Saccharomyces cerevisiae YJM789] PSR2 - Functionally redundant Psr1p homolog, a plasma membrane phosphatase involved in the general stress r... PSR2_YEAST - Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSR2 PE=1 SV=1	1.0E-93	[1..427]	[1..397]
gi\|6841480, gi\|7... - gi\|7705461\|ref\|NP_057480.1\| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small ph...	9.0E-76	[26..421]	[61..451]
CTDSL_CHICK - CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2 gi\|542165764\|ref... - PREDICTED: CTD small phosphatase-like protein isoform X2 [Zonotrichia albicollis] gi\|224044589 - gi\|224044589\|ref\|XP_002196491.1\| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II, polypep...	1.0E-75	[158..425]	[9..271]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-73	[158..425]	[84..334]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFISSILCC SSETTQSNSN SAYRQQQSSS LNKNRSVKHS NTKSRTRGVH QTNSPPSKTN  60
   61 SAATFSSTER STGKSGISTN DNEKKKPSSP TAAVTATTTN NMTKVEKRIS KDDLYEEKYE 120
  121 VDEDEEIDDE DNRRSRGIVQ EKGDAVKDTS RQKKQQQQQQ QQSQPQPQPQ SQSQSQSQSQ 180
  181 SQQRGPTVQV SSDHLIQDMN LSRVSSSSQA SETSNDADDE DDEDE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYIDLTLLQQ GQYHAPGYNT LLPPQDESTK GKKCLILDLD ETLVHSSFKY LRSADFVLSV  60
   61 EIDDQVHNVY VIKRPGVEEF LERVGKLFEV VVFTASVSRY GDPLLDILDT DKVIHHRLFR 120
  121 EACYNYEGNY IKNLSQIGRP LSDIIILDNS PASYIFHPQH AIPISSWFSD THDNELLDII 180
  181 PLLEDLSVKT SLDVGKILDV TI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	98.769551
Match:	PF03031
Description:	NLI interacting factor-like phosphatase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [229-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTLLQQGQY HAPGYNTLLP PQDESTKGKK CLILDLDETL VHSSFKYLRS ADFVLSVEID  60
   61 DQVHNVYVIK RPGVEEFLER VGKLFEVVVF TASVSRYGDP LLDILDTDKV IHHRLFREAC 120
  121 YNYEGNYIKN LSQIGRPLSD IIILDNSPAS YIFHPQHAIP ISSWFSDTHD NELLDIIPLL 180
  181 EDLSVKTSLD VGKILDVTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	2hhlA
Description:	No description for 2hhlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits