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View Structure Prediction Details

Protein: RPF2
Organism: Saccharomyces cerevisiae
Length: 344 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPF2.

Description E-value Query
Range
Subject
Range
RPF2_YEAST - Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF2 PE...
RPF2 - Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subun...
0.0 [1..344] [1..344]
gi|31982662, gi|... - gi|31982662|ref|NP_075812.2| brix domain containing 1 [Mus musculus], gi|19263817|gb|AAH25093.1| Bri...
0.0 [3..299] [6..290]
SPAC926.08c - Brix doamin protein Rpf2
RPF2_SCHPO - Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC9...
0.0 [1..295] [1..292]
gi|16182333 - gi|16182333|gb|AAL13477.1| GH01229p [Drosophila melanogaster]
0.0 [1..304] [3..295]
gi|114608888 - gi|114608888|ref|XP_001156493.1| PREDICTED: brix domain containing 1 isoform 2 [Pan troglodytes]
RPF2 - ribosome production factor 2 homolog (S. cerevisiae)
0.0 [3..249] [6..240]
CE24439 - status:Confirmed UniProt:Q9N3F0 protein_id:AAF60765.1
0.0 [1..297] [1..286]
RPF2_ORYSJ - Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1
gi|125526163 - gi|125526163|gb|EAY74277.1| hypothetical protein OsI_02165 [Oryza sativa Indica Group]
BXD1_ORYSA, BXDC... - Brix domain-containing protein 1 homolog - Oryza sativa (Rice), (Q9AWM9) Brix domain containing prot...
1.0E-94 [4..305] [5..300]

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Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTVKPKNA RAKRALVKRE AKLVENVKQA LFIPGQSCNK NLHDIMVDLS ALKKPDMKRF  60
   61 NRKNDIHPFE DMSPLEFFSE KNDCSLMVLM TSSKKRKNNM TFIRTFGYKI YDMIELMVAD 120
  121 NFKLLSDFKK LTFTVGLKPM FTFQGAAFDT HPVYKQIKSL FLDFFRGEST DLQDVAGLQH 180
  181 VISMTIQGDF QDGEPLPNVL FRVYKLKSYK SDQGGKRLPR IELVEIGPRL DFKIGRIHTP 240
  241 SPDMVTEAHK KPKQLEMKTK KN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 168.022276
Match: PF03679
Description: No description for PF03679 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
aminoacyl-tRNA ligase activity 3.51611427841435 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 3.51602790171379 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 3.51602790171379 bayes_pls_golite062009
ligase activity 2.39787140469438 bayes_pls_golite062009
binding 1.79619860046184 bayes_pls_golite062009
proline-tRNA ligase activity 1.61792117479721 bayes_pls_golite062009
catalytic activity 0.853948963582441 bayes_pls_golite062009
protein binding 0.668055564043996 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [263-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VELDIMGDKL GRIHMGKQDL GKLQTRKMKG LKSKFDQGTE EGDGEVDEDY EDEASYSDDG  60
   61 QEYEEEFVSA TDIEPSAKRQ KK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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